201 - 250 out of 277Page size: 50
  1. 2019

  2. BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data

    Kolpakov, F., Akberdin, I., Kashapov, T., Kiselev, L., Kolmykov, S., Kondrakhin, Y., Kutumova, E., Mandrik, N., Pintus, S., Ryabova, A., Sharipov, R., Yevshin, I. & Kel, A., 1 Jul 2019, In: Nucleic Acids Research. 47, W1, p. W225-W233 9 p.

    Research output: Contribution to journal › Article › peer-review

  3. Insight into genetic and social aspects of modern communities of deaf people in Siberia for forecasting the prevalence of hereditary deafness

    Posukh, O. L., Bady-Khoo, M. S., Romanov, G. P., Barashkov, N. A., Smirnova, A. A., Zytsar, M. V., Maslova, E. A., Danilchenko, V. Y., Posukh, O. V. & Lashin, S. A., Jul 2019, In: European journal of human genetics. 27, p. 1038-1038 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  4. Exome-wide search and functional annotation of genes associated in patients with severe tick-borne encephalitis in a Russian population

    Ignatieva, E. V., Yurchenko, A. A., Voevoda, M. I. & Yudin, N. S., 24 May 2019, In: BMC Medical Genomics. 12, Suppl 3, p. 61 23 p., 61.

    Research output: Contribution to journal › Article › peer-review

  5. New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes

    Ershov, N. I., Mordvinov, V. A., Prokhortchouk, E. B., Pakharukova, M. Y., Gunbin, K. V., Ustyantsev, K., Genaev, M. A., Blinov, A. G., Mazur, A., Boulygina, E., Tsygankova, S., Khrameeva, E., Chekanov, N., Fan, G., Xiao, A., Zhang, H., Xu, X., Yang, H., Solovyev, V., Lee, S. M. Y., & 3 othersLiu, X., Afonnikov, D. A. & Skryabin, K. G., 22 May 2019, In: BMC Genomics. 20, 1, p. 399 22 p., 399.

    Research output: Contribution to journal › Article › peer-review

  6. Genomics research at Bioinformatics of Genome Regulation and Structure\ Systems Biology (BGRS\SB) conferences in Novosibirsk

    Orlov, Y. L., Kochetov, A. V., Li, G. & Kolchanov, N. A., 8 May 2019, In: BMC Genomics. 20, Suppl 3, 5 p., 322.

    Research output: Contribution to journal › Article › peer-review

  7. Spatial heterogeneity promotes antagonistic evolutionary scenarios in microbial community explained by ecological stratification: a simulation study

    Klimenko, A. I., Matushkin, Y. G., Kolchanov, N. A. & Lashin, S. A., 1 May 2019, In: Ecological Modelling. 399, p. 66-76 11 p.

    Research output: Contribution to journal › Article › peer-review

  8. Genome analysis identifies the mutant genes for common industrial Silverblue and Hedlund white coat colours in American mink

    Manakhov, A. D., Andreeva, T. V., Trapezov, O. V., Kolchanov, N. A. & Rogaev, E. I., 14 Mar 2019, In: Scientific Reports. 9, 1, p. 4581 8 p., 4581.

    Research output: Contribution to journal › Article › peer-review

  9. LSM-W 2: Laser scanning microscopy worker for wheat leaf surface morphology

    Zubairova, U. S., Verman, P. Y., Oshchepkova, P. A., Elsukova, A. S. & Doroshkov, A. V., 5 Mar 2019, In: BMC Systems Biology. 13, Suppl 1, p. 22 12 p., 22.

    Research output: Contribution to journal › Article › peer-review

  10. Architecture of Promoters of House-Keeping Genes in Polytene Chromosome Interbands of Drosophila melanogaster

    Zykova, T. Y., Levitsky, V. G. & Zhimulev, I. F., 1 Mar 2019, In: Doklady Biochemistry and Biophysics. 485, 1, p. 95-100 6 p.

    Research output: Contribution to journal › Article › peer-review

  11. Evolutionary biology and biodiversity research at BGRS-2018

    Orlov, Y. L., Baranova, A. V., Kolchanov, N. A. & Moroz, L. L., 26 Feb 2019, In: BMC Evolutionary Biology. 19, Suppl 1, p. 43 3 p., 43.

    Research output: Contribution to journal › Article › peer-review

  12. Natural selection equally supports the human tendencies in subordination and domination: A Genome-wide study with in silico confirmation and in vivo validation in mice

    Chadaeva, I., Ponomarenko, P., Rasskazov, D., Sharypova, E., Kashina, E., Kleshchev, M., Ponomarenko, M., Naumenko, V., Savinkova, L., Kolchanov, N., Osadchuk, L. & Osadchuk, A., 20 Feb 2019, In: Frontiers in Genetics. 10, FEB, p. 73 16 p., 73.

    Research output: Contribution to journal › Article › peer-review

  13. The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

    Doroshkov, A. V., Konstantinov, D. K., Afonnikov, D. A. & Gunbin, K. V., 15 Feb 2019, In: BMC Plant Biology. 19, Suppl 1, 15 p., 53.

    Research output: Contribution to journal › Article › peer-review

  14. MIGREW: Database on molecular identification of genes for resistance in wheat

    Kazantsev, F. V., Skolotneva, E. S., Kelbin, V. N., Salina, E. A. & Lashin, S. A., 5 Feb 2019, In: BMC Bioinformatics. 20, Suppl 1, 8 p., 36.

    Research output: Contribution to journal › Article › peer-review

  15. A modular visual model of energy metabolism in human skeletal muscle

    Kiselev, I. N., Akberdin, I. R., Vertyshev, A. Y., D.V., P. & Kolpakov, F. A., 1 Jan 2019, In: Mathematical Biology and Bioinformatics. 14, 2, p. 373-392 20 p.

    Research output: Contribution to journal › Article › peer-review

  16. A system approach to the modeling of fungal infections of the wheat leaf

    Nikolaev, S. V., Zubairova, U. S., Skolotneva, E. S., Orlova, E. A. & Afonnikov, D. A., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 1, p. 100-109 10 p.

    Research output: Contribution to journal › Article › peer-review

  17. Effect of neonatal dexamethasone treatment on cognitive abilities of adult male mice and gene expression in the hypothalamus

    Bondar, N. P., Reshetnikov, V. V., Burdeeva, K. V. & Merkulova, T. I., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 4, p. 456-464 9 p.

    Research output: Contribution to journal › Article › peer-review

  18. Image-based analysis of quantitative morphological characteristics of wild potato tubers using the desktop application SeedСounter

    Ivanova, K. A., Komyshev, E. G., Genaev, M. A., Egorova, A. A., Koloshina, K. A., Chalaya, N. A., Afonnikov, D. A., Kochetov, A. V., Rogozina, E. V. & Gerasimova, S. V., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 5, p. 519-526 8 p.

    Research output: Contribution to journal › Article › peer-review

  19. Progress in plant genome sequencing: Research directions

    Bragina, M. K., Afonnikov, D. A. & Salina, E. A., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 1, p. 38-48 11 p.

    Research output: Contribution to journal › Article › peer-review

  20. Web-Based Computational Tools for the Prediction and Analysis of Posttranslational Modifications of Proteins

    Ivanisenko, V. A., Ivanisenko, T. V., Saik, O. V., Demenkov, P. S., Afonnikov, D. A. & Kolchanov, N. A., 1 Jan 2019, Methods in Molecular Biology. Humana Press, Vol. 1934. p. 1-20 20 p. (Methods in Molecular Biology; vol. 1934).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  21. 2018

  22. Deciphering auxin-ethylene crosstalk at a systems level

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ubogoeva, E. V. & Mironova, V. V., 14 Dec 2018, In: International Journal of Molecular Sciences. 19, 12, 15 p., 4060.

    Research output: Contribution to journal › Review article › peer-review

  23. Regulatory SNPs and their widespread effects on the transcriptome

    Merkulov, V. M., Leberfarb, E. Y. & Merkulova, T. I., 1 Dec 2018, In: Journal of Biosciences. 43, 5, p. 1069-1075 7 p.

    Research output: Contribution to journal › Review article › peer-review

  24. Rare Earth Elements alter redox balance in methylomicrobium alcaliphilum 20ZR

    Akberdin, I. R., Collins, D. A., Hamilton, R., Oshchepkov, D. Y., Shukla, A. K., Nicora, C. D., Nakayasu, E. S., Adkins, J. N. & Kalyuzhnaya, M. G., 27 Nov 2018, In: Frontiers in Microbiology. 9, NOV, p. 2735 12 p., 2735.

    Research output: Contribution to journal › Article › peer-review

  25. Genetic Organization of Open Chromatin Domains Situated in Polytene Chromosome Interbands in Drosophila

    Zykova, T. Y., Popova, O. O., Khoroshko, V. A., Levitsky, V. G., Lavrov, S. A. & Zhimulev, I. F., 1 Nov 2018, In: Doklady Biochemistry and Biophysics. 483, 1, p. 297-301 5 p.

    Research output: Contribution to journal › Article › peer-review

  26. Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase

    Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.

    Research output: Contribution to journal › Article › peer-review

  27. Novel approach to functional SNPs discovery from genome-wide data reveals promising variants for colon cancer risk

    Korbolina, E. E., Brusentsov, I. I., Bryzgalov, L. O., Leberfarb, E. Y., Degtyareva, A. O. & Merkulova, T. I., 1 Jun 2018, In: Human Mutation. 39, 6, p. 851-859 9 p.

    Research output: Contribution to journal › Article › peer-review

  28. A matrix metalloproteinase 9 (MMP9) gene single nucleotide polymorphism is associated with predisposition to tick-borne encephalitis virus-induced severe central nervous system disease

    Barkhash, A. V., Yurchenko, A. A., Yudin, N. S., Ignatieva, E. V., Kozlova, I. V., Borishchuk, I. A., Pozdnyakova, L. L., Voevoda, M. I. & Romaschenko, A. G., 1 May 2018, In: Ticks and Tick-borne Diseases. 9, 4, p. 763-767 5 p.

    Research output: Contribution to journal › Article › peer-review

  29. Marital Structure, Genetic Fitness, and the GJB2 Gene Mutations among Deaf People in Yakutia (Eastern Siberia, Russia)

    Romanov, G. P., Barashkov, N. A., Teryutin, F. M., Lashin, S. A., Solovyev, A. V., Pshennikova, V. G., Bondar, A. A., Morozov, I. V., Sazonov, N. N., Tomsky, M. I., Dzhemileva, L. U., Khusnutdinova, E. K., Posukh, O. L. & Fedorova, S. A., 1 May 2018, In: Russian Journal of Genetics. 54, 5, p. 554-561 8 p.

    Research output: Contribution to journal › Article › peer-review

  30. Human Genetic Predisposition to Diseases Caused by Viruses from Flaviviridae Family

    Yudin, N. S., Barkhash, A. V., Maksimov, V. N., Ignatieva, E. V. & Romaschenko, A. G., 27 Apr 2018, In: Molekuliarnaia biologiia. 52, 2, p. 190-209 20 p.

    Research output: Contribution to journal › Review article › peer-review

  31. Haplotype analysis of APOE intragenic SNPs

    Babenko, V. N., Afonnikov, D. A., Ignatieva, E. V., Klimov, A. V., Gusev, F. E. & Rogaev, E. I., 19 Apr 2018, In: BMC Neuroscience. 19, Suppl 1, p. 16 12 p., 16.

    Research output: Contribution to journal › Article › peer-review

  32. Novel functional variants at the GWAS-implicated loci might confer risk to major depressive disorder, bipolar affective disorder and schizophrenia

    Bryzgalov, L. O., Korbolina, E. E., Brusentsov, I. I., Leberfarb, E. Y., Bondar, N. P. & Merkulova, T. I., 19 Apr 2018, In: BMC Neuroscience. 19, Suppl 1, p. 22 16 p., 22.

    Research output: Contribution to journal › Article › peer-review

  33. Molecular Adaptations to Social Defeat Stress and Induced Depression in Mice

    Bondar, N., Bryzgalov, L., Ershov, N., Gusev, F., Reshetnikov, V., Avgustinovich, D., Tenditnik, M., Rogaev, E. & Merkulova, T., 1 Apr 2018, In: Molecular Neurobiology. 55, 4, p. 3394-3407 14 p.

    Research output: Contribution to journal › Article › peer-review

  34. Polytene chromosomes – A portrait of functional organization of drosophila genome

    Zykova, T. Y., Levitsky, V. G., Belyaeva, E. S. & Zhimulev, I. F., Apr 2018, In: Current Genomics. 19, 3, p. 179-191 13 p.

    Research output: Contribution to journal › Review article › peer-review

  35. Pluripotency gene network dynamics: System views from parametric analysis

    Akberdin, I. R., Omelyanchuk, N. A., Fadeev, S. I., Leskova, N. E., Oschepkova, E. A., Kazantsev, F. V., Matushkin, Y. G., Afonnikov, D. A. & Kolchanov, N. A., 29 Mar 2018, In: PLoS ONE. 13, 3, p. e0194464 24 p., 0194464.

    Research output: Contribution to journal › Article › peer-review

  36. Correction: Methane utilization in Methylomicrobium alcaliphilum 20ZR: A systems approach (Scientific Reports (2017) DOI: 10.1038/s41598-018-20574-z): a systems approach (vol 8, 2017)

    Akberdin, I. R., Thompson, M., Hamilton, R., Desai, N., Alexander, D., Henard, C. A., Guarnieri, M. T. & Kalyuzhnaya, M. G., 14 Mar 2018, In: Scientific Reports. 8, 1, p. 4753 1 p., 4753.

    Research output: Contribution to journal › Comment/debate › peer-review

  37. Human Genetic Predisposition to Diseases Caused by Viruses from Flaviviridae Family

    Yudin, N. S., Barkhash, A. V., Maksimov, V. N., Ignatieva, E. V. & Romaschenko, A. G., 1 Mar 2018, In: Molecular Biology. 52, 2, p. 165-181 17 p.

    Research output: Contribution to journal › Review article › peer-review

  38. Candidate SNP markers of reproductive potential are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters

    Chadaeva, I. V., Ponomarenko, P. M., Rasskazov, D. A., Sharypova, E. B., Kashina, E. V., Zhechev, D. A., Drachkova, I. A., Arkova, O. V., Savinkova, L. K., Ponomarenko, M. P., Kolchanov, N. A., Osadchuk, L. V. & Osadchuk, A. V., 9 Feb 2018, In: BMC Genomics. 19, Suppl 3, p. 0 23 p., 0.

    Research output: Contribution to journal › Article › peer-review

  39. Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice

    Ershov, N. I., Bondar, N. P., Lepeshko, A. A., Reshetnikov, V. V., Ryabushkina, J. A. & Merkulova, T. I., 9 Feb 2018, In: BMC Genomics. 19, Suppl 3, p. 93 11 p., 93.

    Research output: Contribution to journal › Article › peer-review

  40. Methane utilization in Methylomicrobium alcaliphilum 20ZR: A systems approach

    Akberdin, I. R., Thompson, M., Hamilton, R., Desai, N., Alexander, D., Henard, C. A., Guarnieri, M. T. & Kalyuzhnaya, M. G., 6 Feb 2018, In: Scientific Reports. 8, 1, p. 2512 13 p., 2512.

    Research output: Contribution to journal › Article › peer-review

  41. Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets

    Vishnevsky, O. V., Bocharnikov, A. V. & Kolchanov, N. A., 1 Feb 2018, In: Journal of Bioinformatics and Computational Biology. 16, 1, 23 p., 1740012.

    Research output: Contribution to journal › Article › peer-review

  42. MAMMOTh: A new database for curated mathematical models of biomolecular systems

    Kazantsev, F., Akberdin, I., Lashin, S., Ree, N., Timonov, V., Ratushny, A., Khlebodarova, T. & Likhoshvai, V., 1 Feb 2018, In: Journal of Bioinformatics and Computational Biology. 16, 1, 16 p., 1740010.

    Research output: Contribution to journal › Article › peer-review

  43. Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana

    Cherenkov, P., Novikova, D., Omelyanchuk, N., Levitsky, V., Grosse, I., Weijers, D. & Mironova, V., 4 Jan 2018, In: Journal of Experimental Botany. 69, 2, p. 329-339 11 p.

    Research output: Contribution to journal › Article › peer-review

  44. High temperature and pressure influence the interdomain orientation of Nip7 proteins from P. abyssi and P. furiosus: MD simulations

    Medvedev, K. E., Kolchanov, N. A. & Afonnikov, D. A., 2 Jan 2018, In: Journal of Biomolecular Structure and Dynamics. 36, 1, p. 68-82 15 p.

    Research output: Contribution to journal › Article › peer-review

  45. An experimental study of the effect of rare polymorphisms of human HBB, HBD and F9 promoter TATA boxes on the kinetics of interaction with the TATA-binding protein

    Sharypova, E. B., Drachkova, I. A., Kashina, E. V., Rasskazov, D. A., Ponomarenko, M. P., Ponomarenko, M. P., Kolchanov, N. A. & Savinkova, L. K., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 145-152 8 p.

    Research output: Contribution to journal › Article › peer-review

  46. An integrated information system on bioresource collections of the FASO of Russia

    Lashin, S. A., Afonnikov, D. A., Genaev, M. A., Kazantsev, F. V., Komyshev, E. G., Oschepkova, E. A., Petrov, A. V., Rasskazov, D. A., Smirnova, A. A. & Kolchanov, N. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 3, p. 386-393 8 p.

    Research output: Contribution to journal › Article › peer-review

  47. Informational resources on potato germplasm collections

    Afonnikov, D. A., Totsky, I. V. & Stasevski, Z., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 115-121 7 p.

    Research output: Contribution to journal › Review article › peer-review

  48. Information system on microbial collections as a part of bioresource collections portal for Russia’s FASO organizations: A working protocol

    Kazantsev, F. V., Smirnova, A. A., Rozanov, A. S., Uvarova, Y. E., Afonnikov, D. A., Peltek, S. E. & Lashin, S. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 2, p. 279-284 6 p.

    Research output: Contribution to journal › Article › peer-review

  49. Leaf hairiness in potato Solanum tuberosum: Morphology, function and methods of analysis

    Doroshkov, A. V. & Afonnikov, D. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 46-53 8 p.

    Research output: Contribution to journal › Review article › peer-review

  50. Prioritization of genes associated with the pathogenesis of leukosis in cattle

    Yudin, N. S., Podkolodnyy, N. L., Agarkova, T. A. & Ignatieva, E. V., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 8, p. 1063-1069 7 p.

    Research output: Contribution to journal › Article › peer-review

  51. SpikeDroidDB: An information system for annotation of morphometric characteristics of wheat spike

    Genaev, M. A., Komyshev, E. G., Hao, F., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 132-140 9 p.

    Research output: Contribution to journal › Article › peer-review

  52. The bristle pattern development in Drosophila melanogaster: The prepattern and achaete-scute genes

    Furman, D. P. & Bukharina, T. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 8, p. 1046-1054 9 p.

    Research output: Contribution to journal › Article › peer-review

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