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  1. 2023

  2. Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder

    Uvarova, Y. E., Demenkov, P. S., Kuzmicheva, I. N., Venzel, A. S., Mischenko, E. L., Ivanisenko, T. V., Efimov, V. M., Bannikova, S. V., Vasilieva, A. R., Ivanisenko, V. A. & Peltek, S. E., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  3. BGRS: bioinformatics of genome regulation and data integration

    Orlov, Y. L., Chen, M., Kolchanov, N. A. & Hofestädt, R., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 20230032.

    Research output: Contribution to journal › Article › peer-review

  4. Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Volianskaia, A. R., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Kolchanov, N. A., Lavrik, I. N. & Ivanisenko, V. A., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  5. Central Regulatory Circuit of the Drosophila Mechanoreceptor Morphogenesis System: Effects of Mutations

    Furman, D. P., Bukharina, T. A. & Golubyatnikov, V. P., Sept 2023, In: Journal of Applied and Industrial Mathematics. 17, 3, p. 535-543 9 p.

    Research output: Contribution to journal › Article › peer-review

  6. Delay-differential SEIR modeling for improved modelling of infection dynamics

    Киселев, И., Акбердин, И. Р. & Колпаков, Ф., 18 Aug 2023, In: Scientific Reports. 13, 1, 15 p., 13439.

    Research output: Contribution to journal › Article › peer-review

  7. Numerous Trigger-like Interactions of Kinases/Protein Phosphatases in Human Skeletal Muscles Can Underlie Transient Processes in Activation of Signaling Pathways during Exercise

    Vertyshev, A. Y., Akberdin, I. R. & Kolpakov, F. A., 7 Jul 2023, In: International Journal of Molecular Sciences. 24, 13, 11223.

    Research output: Contribution to journal › Review article › peer-review

  8. Comparison of the evolutionary patterns of DNA repeats in ancient and young invertebrate species flocks of Lake Baikal

    Yuxiang, W., Peretolchina, T. E., Romanova, E. V. & Sherbakov, D. Y., Jul 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 4, p. 349-356 8 p., 7.

    Research output: Contribution to journal › Article › peer-review

  9. ICAnnoLncRNA: A Snakemake Pipeline for a Long Non-Coding-RNA Search and Annotation in Transcriptomic Sequences

    Pronozin, A. Y. & Afonnikov, D. A., 24 Jun 2023, In: Genes. 14, 7, 1331.

    Research output: Contribution to journal › Article › peer-review

  10. A New Visualization and Analysis Method for a Convolved Representation of Mass Computational Experiments with Biological Models

    Klimenko, A. I., Vorobeva, D. A. & Lashin, S. A., Jun 2023, In: Mathematics. 11, 12, 2783.

    Research output: Contribution to journal › Article › peer-review

  11. Assembly and Analysis of Plastomes for 15 Potato Cultivars Grown in Russia

    Karetnikov, D. I., Salina, E. A., Kochetov, A. V. & Afonnikov, D. A., Jun 2023, In: Agronomy. 13, 6, 1454.

    Research output: Contribution to journal › Article › peer-review

  12. Research Topics of the Bioinformatics of Gene Regulation

    Orlov, Y. L., Anashkina, A. A., Kumeiko, V. V., Chen, M. & Kolchanov, N. A., 15 May 2023, In: International Journal of Molecular Sciences. 24, 10, 8774.

    Research output: Contribution to journal › Article › peer-review

  13. Analysis of Genome Structure and Its Variations in Potato Cultivars Grown in Russia

    Karetnikov, D. I., Vasiliev, G. V., Toshchakov, S. V., Shmakov, N. A., Genaev, M. A., Nesterov, M. A., Ibragimova, S. M., Rybakov, D. A., Gavrilenko, T. A., Salina, E. A., Patrushev, M. V., Kochetov, A. V. & Afonnikov, D. A., 16 Mar 2023, In: International Journal of Molecular Sciences. 24, 6, 5713.

    Research output: Contribution to journal › Article › peer-review

  14. Impact of Negative Feedbacks on De Novo Pyrimidines Biosynthesis in Escherichia coli

    Akberdin, I. R., Kozlov, K. N., Kazantsev, F. V., Fadeev, S. I., Likhoshvai, V. A. & Khlebodarova, T. M., 2 Mar 2023, In: International Journal of Molecular Sciences. 24, 5, 4806.

    Research output: Contribution to journal › Article › peer-review

  15. Three Cycles of Continuous Propagation of a Severe PSTVd Strain NicTr-3 in Solanum lycopersicum cv. Rutgers Resulted in Its Attenuation and Very Mild Disease Symptoms in Potato

    Kochetov, A. V., Shmakov, N., Afonnikov, D. A., Vasiliev, G. V., Shatskaya, N. V., Egorova, A. A., Mironenko, N. V., Lashina, N. M., Khiutti, A. V. & Afanasenko, O. S., Mar 2023, In: Agronomy. 13, 3, 684.

    Research output: Contribution to journal › Article › peer-review

  16. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

  17. Trait-Based Method of Quantitative Assessment of Ecological Functional Groups in the Human Intestinal Microbiome

    Kropochev, A. I., Lashin, S. A., Matushkin, Y. G. & Klimenko, A. I., 11 Jan 2023, In: Biology. 12, 1, 115.

    Research output: Contribution to journal › Article › peer-review

  18. Antitumor efficacy of multi-target in situ vaccinations with CpG oligodeoxynucleotides, anti-OX40, anti-PD1 antibodies, and aptamers

    Proskurina, A. S., Рузанова, В. С., Риттер, Г. С., Ефремов, Я. Р., Mustafin, Z. S., Лашин, С. А., Буракова, Е. А., Фокина, А. А., Zatsepin, T. S., Стеценко, Д. А., Леплина, О. Ю., Останин, А. А., Черных, Е. Р. & Bogachev, S. S., 2023, In: Journal of Biomedical Research. 37, 3, p. 194-212 19 p.

    Research output: Contribution to journal › Article › peer-review

  19. Image-based classification of wheat spikes by glume pubescence using convolutional neural networks

    Artemenko, N. V., Genaev, M. A., Epifanov, R. U., Komyshev, E. G., Kruchinina, Y. V., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 2023, In: Frontiers in Plant Science. 14, 16 p., 1336192.

    Research output: Contribution to journal › Article › peer-review

  20. 2022

  21. Algorithm for the Reconstruction of Mathematical Frame Models of Bacterial Transcription Regulation

    Lakhova, T. N., Kazantsev, F. V., Mukhin, A. M., Kolchanov, N. A., Matushkin, Y. G. & Lashin, S. A., Dec 2022, In: Mathematics. 10, 23, 4480.

    Research output: Contribution to journal › Article › peer-review

  22. Plasma metabolomics and gene regulatory networks analysis reveal the role of nonstructural SARS-CoV-2 viral proteins in metabolic dysregulation in COVID-19 patients

    Ivanisenko, V. A., Gaisler, E. V., Basov, N. V., Rogachev, A. D., Cheresiz, S. V., Ivanisenko, T. V., Demenkov, P. S., Mishchenko, E. L., Khripko, O. P., Khripko, Y. I., Voevoda, S. M., Karpenko, T. N., Velichko, A. J., Voevoda, M. I., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2022, In: Scientific Reports. 12, 1, 12 p., 19977.

    Research output: Contribution to journal › Article › peer-review

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