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  1. 2023

  2. State-of the-Art Constraint-Based Modeling of Microbial Metabolism: From Basics to Context-Specific Models with a Focus on Methanotrophs

    Куляшов, М. А., Колмыков, С. К., Хлебодарова, Т. М. & Акбердин, И. Р., 14 Dec 2023, In: Microorganisms. 11, 12, 22 p., 2987.

    Research output: Contribution to journal › Review article › peer-review

  3. Fishing Innate Immune System Properties through the Transcriptomic Single-Cell Data of Teleostei

    Bobrovskikh, A. V., Zubairova, U. S. & Doroshkov, A. V., 12 Dec 2023, In: Biology. 12, 12, 1516.

    Research output: Contribution to journal › Review article › peer-review

  4. Программа расшифровки аббревиатур сущностей в рефератах научных публикаций на основе их контекста (ЭНДДекрипт) / Program for decoding entity abbreviations in abstracts of scientific publications based on their context (ANDDecrypt)

    Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 8 Dec 2023, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2023686851, 16 Nov 2023, Priority date 16 Nov 2023, Priority No. 2023684403

    Research output: Patent › Software registration

  5. DyCeModel: a tool for 1D simulation for distribution of plant hormones controlling tissue patterning

    Azarova, D. S., Omelyanchuk, N. A., Mironova, V. V., Zemlyanskaya, E. V. & Lavrekha, V. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 890-897 8 p.

    Research output: Contribution to journal › Article › peer-review

  6. Gbs-dp: a bioinformatics pipeline for processing data coming from genotyping by sequencing

    Pronozin, A. Y., Salina, E. A. & Afonnikov, D. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 737-745 9 p.

    Research output: Contribution to journal › Article › peer-review

  7. Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium

    Ivanisenko, V. A., Basov, N. V., Makarova, A. A., Venzel, A. S., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Kleshchev, M. A., Gaisler, E. V., Moroz, G. B., Plesko, V. V., Sotnikova, Y. S., Patrushev, Y. V., Lomivorotov, V. V., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 768-775 8 p.

    Research output: Contribution to journal › Article › peer-review

  8. InterTransViewer: a comparative description of differential gene expression profiles from different experiments

    Tyapkin, А. V., Lavrekha, V. V., Ubogoeva, E. V., Oshchepkov, D. Y., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1042-1052 11 p.

    Research output: Contribution to journal › Article › peer-review

  9. Intratumor heterogeneity: models of malignancy emergence and evolution

    Ivanov, R. A. & Lashin, S. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 815-819 5 p.

    Research output: Contribution to journal › Article › peer-review

  10. Laboratory information systems for research management in biology

    Mukhin, A. M., Kazantsev, F. V. & Lashin, S. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 898-905 8 p.

    Research output: Contribution to journal › Article › peer-review

  11. Molecular-genetic pathways of hepatitis C virus regulation of the expression of cellular factors PREB and PLA2G4C, which play an important role in virus replication

    Mishchenko, E. L., Makarova, A. A., Antropova, E. A., Venzel, A. S., Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 776-783 8 p.

    Research output: Contribution to journal › Article › peer-review

  12. Prioritization of potential pharmacological targets for the development of anti-hepatocarcinoma drugs modulating the extrinsic apoptosis pathway: the reconstruction and analysis of associative gene networks help

    Demenkov, P. S., Antropova, E. A., Adamovskaya, A. V., Mishchenko, E. L., Khlebodarova, T. M., Ivanisenko, T. V., Ivanisenko, N. V., Venzel, A. S., Lavrik, I. N. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 784-793 10 p.

    Research output: Contribution to journal › Article › peer-review

  13. Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

    Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

    Research output: Contribution to journal › Article › peer-review

  14. The central regulatory circuit in the gene network controlling the morphogenesis of Drosophila mechanoreceptors: an in silico analysis

    Bukharina, T. A., Golubyatnikov, V. P. & Furman, D. P., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 746-754 9 p.

    Research output: Contribution to journal › Article › peer-review

  15. Определение содержания меланина и антоцианов в зернах ячменя на основе анализа цифровых изображений методами машинного обучения

    Komyshev, E. G., Genaev, M. A., Busov, I. D., Kozhekin, M. V., Artemenko, N. V., Glagoleva, A. Y., Koval, V. S. & Afonnikov, D. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 859-868 10 p., 15.

    Research output: Contribution to journal › Article › peer-review

  16. Bioinformatic Analysis Reveals the Role of Translation Elongation Efficiency Optimisation in the Evolution of Ralstonia Genus

    Korenskaia, A. Y., Matushkin, Y. G., Mustafin, Z. S., Lashin, S. A. & Klimenko, A. I., 16 Oct 2023, In: Biology. 12, 10, 1338.

    Research output: Contribution to journal › Article › peer-review

  17. Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder

    Uvarova, Y. E., Demenkov, P. S., Kuzmicheva, I. N., Venzel, A. S., Mischenko, E. L., Ivanisenko, T. V., Efimov, V. M., Bannikova, S. V., Vasilieva, A. R., Ivanisenko, V. A. & Peltek, S. E., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  18. BGRS: bioinformatics of genome regulation and data integration

    Orlov, Y. L., Chen, M., Kolchanov, N. A. & Hofestädt, R., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 20230032.

    Research output: Contribution to journal › Article › peer-review

  19. Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Volianskaia, A. R., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Kolchanov, N. A., Lavrik, I. N. & Ivanisenko, V. A., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  20. Central Regulatory Circuit of the Drosophila Mechanoreceptor Morphogenesis System: Effects of Mutations

    Furman, D. P., Bukharina, T. A. & Golubyatnikov, V. P., Sept 2023, In: Journal of Applied and Industrial Mathematics. 17, 3, p. 535-543 9 p.

    Research output: Contribution to journal › Article › peer-review

  21. Delay-differential SEIR modeling for improved modelling of infection dynamics

    Киселев, И., Акбердин, И. Р. & Колпаков, Ф., 18 Aug 2023, In: Scientific Reports. 13, 1, 15 p., 13439.

    Research output: Contribution to journal › Article › peer-review

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