151 - 200 out of 277Page size: 50
  1. 2021

  2. Genome-wide atlas of promoter expression reveals contribution of transcribed regulatory elements to genetic control of disuse-mediated atrophy of skeletal muscle

    Pintus, S. S., Akberdin, I. R., Yevshin, I., Makhnovskii, P., Tyapkina, O., Nigmetzyanov, I., Nurullin, L., Devyatiyarov, R., Shagimardanova, E., Popov, D., Kolpakov, F. A., Gusev, O. & Gazizova, G. R., Jun 2021, In: Biology. 10, 6, 557.

    Research output: Contribution to journal › Article › peer-review

  3. A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis

    Bobrovskikh, A., Doroshkov, A., Mazzoleni, S., Cartenì, F., Giannino, F. & Zubairova, U., 21 May 2021, In: Frontiers in Genetics. 12, p. 652974 652974.

    Research output: Contribution to journal › Review article › peer-review

  4. Do autism spectrum and autoimmune disorders share predisposition gene signature due to mtor signaling pathway controlling expression?

    Trifonova, E. A., Klimenko, A. I., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 16 May 2021, In: International Journal of Molecular Sciences. 22, 10, 5248.

    Research output: Contribution to journal › Article › peer-review

  5. Comparative transcriptome profiling of a resistant vs susceptible bread wheat (Triticum aestivum L.) cultivar in response to water deficit and cold stress

    Konstantinov, D. K., Zubairova, U. S., Ermakov, A. A. & Doroshkov, A. V., May 2021, In: PeerJ. 9, p. e11428 e11428.

    Research output: Contribution to journal › Article › peer-review

  6. Вироид веретеновидности клубней картофеля

    Kochetov, A. V., Pronozin, A. Y., Shatskaya, N. V., Afonnikov, D. A. & Afanasenko, O. S., May 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 269-275 7 p., 3.

    Research output: Contribution to journal › Article › peer-review

  7. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

    Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

    Research output: Contribution to journal › Article › peer-review

  8. Рибосомное профилирование как инструмент исследования трансляции у растений: основные итоги, проблемы и перспективы

    Afonnikov, D. A., Sinitsyna, O. I., Golubeva, T. S., Shmakov, N. A. & Kochetov, A. V., Mar 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 251-259 9 p., 1.

    Research output: Contribution to journal › Article › peer-review

  9. Технологии поиска и исследования потенциально осциллирующих ферментативных систем

    Lakhova, T. N., Kazantsev, F. V., Lashin, S. A. & Matushkin, Y. G., Mar 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 318-330 13 p., 9.

    Research output: Contribution to journal › Article › peer-review

  10. Геномная изменчивость в регуляторных районах генов, ассоциированная с заболеваниями человека: механизмы влияния на транскрипцию генов и полногеномные информационные ресурсы, обеспечивающие исследование этих механизмов

    Ignatieva, E. V. & Matrosova, E. A., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 18-29 12 p., 2.

    Research output: Contribution to journal › Article › peer-review

  11. Метод поиска структурной гетерогенности сайтов связывания транскрипционных факторов с использованием альтернативных de novo моделей на примере FOXA2

    Tsukanov, A. V., Levitsky, V. G. & Merkulova, T. I., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 7-17 11 p., 1.

    Research output: Contribution to journal › Article › peer-review

  12. Определение количественного содержания хлорофиллов в листьях по спектрам отражения алгоритмом случайного леса

    Urbanovich, E. A., Afonnikov, D. A. & Nikolaev, S. V., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 64-70 7 p., 7.

    Research output: Contribution to journal › Article › peer-review

  13. Филостратиграфический анализ генных сетей заболеваний человека

    Mustafin, Z. S., Lashin, S. A. & Matushkin, Y. G., Jan 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 46-56 11 p., 5.

    Research output: Contribution to journal › Article › peer-review

  14. Hypoxia exerts oxidative stress and changes in expression of antioxidant enzyme genes in gills of Mytilus galloprovincialis (Lamarck, 1819)

    Andreyeva, A. Y., Gostyukhina, O. L., Kladchenko, E. S., Afonnikov, D. A., Rasskazov, D. A., Lantushenko, A. O. & Vodiasova, E. A., 2021, In: Marine Biology Research. 17, 4, p. 369-379 11 p.

    Research output: Contribution to journal › Article › peer-review

  15. The Web Platform for Storing Biotechnologically Significant Properties of Bacterial Strains

    Mukhin, A. M., Kazantsev, F. V., Klimenko, A. I., Lakhova, T. N., Demenkov, P. S. & Lashin, S. A., 2021, Parallel Computing Technologies - 16th International Conference, PaCT 2021, Proceedings. Malyshkin, V. (ed.). Springer, p. 445-450 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12942 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  16. 2020

  17. Nucleosome positioning around transcription start site correlates with gene expression only for active chromatin state in drosophila interphase chromosomes

    Levitsky, V. G., Zykova, T. Y., Moshkin, Y. M. & Zhimulev, I. F., 1 Dec 2020, In: International Journal of Molecular Sciences. 21, 23, p. 1-10 10 p., 9282.

    Research output: Contribution to journal › Article › peer-review

  18. A new approach to estimating the prevalence of hereditary hearing loss: An analysis of the distribution of sign language users based on census data in Russia

    Romanov, G. P., Pshennikova, V. G., Lashin, S. A., Solovyev, A. V., Teryutin, F. M., Cherdonova, A. M., Borisova, T. V., Sazonov, N. N., Khusnutdinova, E. K., Posukh, O. L., Fedorova, S. A. & Barashkov, N. A., Nov 2020, In: PLoS ONE. 15, 11 November, p. e0242219 e0242219.

    Research output: Contribution to journal › Article › peer-review

  19. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis

    Freire-Rios, A., Tanaka, K., Crespo, I., Van der Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Roeland Boer, D., Mironova, V. & Weijers, D., 29 Sept 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 39, p. 24557-24566 10 p.

    Research output: Contribution to journal › Article › peer-review

  20. The phylogeny of class b flavoprotein monooxygenases and the origin of the yucca protein family

    Turnaev, I. I., Gunbin, K. V., Suslov, V. V., Akberdin, I. R., Kolchanov, N. A. & Afonnikov, D. A., 1 Sept 2020, In: Plants. 9, 9, p. 1-22 22 p., 1092.

    Research output: Contribution to journal › Article › peer-review

  21. Asymmetric conservation within pairs of co-occurred motifs mediates weak direct binding of transcription factors in chip-seq data

    Levitsky, V., Oshchepkov, D., Zemlyanskaya, E. & Merkulova, T., 21 Aug 2020, In: International Journal of Molecular Sciences. 21, 17, p. 1-22 22 p., 6023.

    Research output: Contribution to journal › Article › peer-review

  22. The Effects of Chronic Stress on Brain Myelination in Humans and in Various Rodent Models

    Antontseva, E., Bondar, N., Reshetnikov, V. & Merkulova, T., 10 Aug 2020, In: Neuroscience. 441, p. 226-238 13 p.

    Research output: Contribution to journal › Review article › peer-review

  23. Subcellular compartmentalization of the plant antioxidant system: an integrated overview

    Bobrovskikh, A., Zubairova, U., Kolodkin, A. & Doroshkov, A., 16 Jul 2020, In: PeerJ. 8, p. e9451 27 p., e9451.

    Research output: Contribution to journal › Review article › peer-review

  24. A genome-scale metabolic model of 2,3-butanediol production by thermophilic bacteria geobacillus icigianus

    Kulyashov, M., Peltek, S. E. & Akberdin, I. R., 1 Jul 2020, In: Microorganisms. 8, 7, p. 1-13 13 p., 1002.

    Research output: Contribution to journal › Article › peer-review

  25. Analysis of color and texture characteristics of cereals on digital images

    Komyshev, E. G., Genaev, M. A. & Afonnikov, D. A., Jul 2020, In: Вавиловский журнал генетики и селекции. 24, 4, p. 340-347 8 p.

    Research output: Contribution to journal › Review article › peer-review

  26. Application of neural networks to image recognition of wheat rust diseases

    Genaev, M., Ekaterina, S. & Afonnikov, D., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 40-42 3 p. 9214703. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  27. GPU Based Composite Elements Discovery in Large DNADatasets

    Vishnevsky, O., Bocharnikov, A. & Kolchanov, N., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 135-138 4 p. 9214777. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  28. Mathematical and Numerical Models of the Central Regulatory Circuit of the Morphogenesis System of Drosophila

    Bukharina, T. A., Akinshin, A. A., Golubyatnikov, V. P. & Furman, D. P., 1 May 2020, In: Journal of Applied and Industrial Mathematics. 14, 2, p. 249-255 7 p.

    Research output: Contribution to journal › Article › peer-review

  29. rs2072580T>A Polymorphism in the Overlapping Promoter Regions of the SART3 and ISCU Genes Associated with the Risk of Breast Cancer

    Degtyareva, A. O., Leberfarb, E. Y., Efimova, E. G., Brusentsov, I. I., Usova, A. V., Lushnikova, E. L. & Merkulova, T. I., 1 May 2020, In: Bulletin of Experimental Biology and Medicine. 169, 1, p. 81-84 4 p.

    Research output: Contribution to journal › Article › peer-review

  30. Specification and regulation of vascular tissue identity in the Arabidopsis embryo

    Smit, M. E., Llavata-Peris, C. I., Roosjen, M., van Beijnum, H., Novikova, D., Levitsky, V., Sevilem, I., Roszak, P., Slane, D., Jürgens, G., Mironova, V., Brady, S. M. & Weijers, D., 20 Apr 2020, In: Development (Cambridge). 147, 8, 15 p., dev186130.

    Research output: Contribution to journal › Article › peer-review

  31. Fold-change-specific enrichment analysis (FSEA): Quantification of transcriptional response magnitude for functional gene groups

    Wiebe, D. S., Omelyanchuk, N. A., Mukhin, A. M., Grosse, I., Lashin, S. A., Zemlyanskaya, E. V. & Mironova, V. V., 17 Apr 2020, In: Genes. 11, 4, 14 p., 434.

    Research output: Contribution to journal › Article › peer-review

  32. Genes containing long introns occupy series of bands and interbands in drosophila melanogaster polytene chromosomes

    Khoroshko, V. A., Pokholkova, G. V., Levitsky, V. G., Zykova, T. Y., Antonenko, O. V., Belyaeva, E. S. & Zhimulev, I. F., Apr 2020, In: Genes. 11, 4, 32 p., 417.

    Research output: Contribution to journal › Article › peer-review

  33. Faint gray bands in Drosophila melanogaster polytene chromosomes are formed by coding sequences of housekeeping genes

    Demakova, O. V., Demakov, S. A., Boldyreva, L. V., Zykova, T. Y., Levitsky, V. G., Semeshin, V. F., Pokholkova, G. V., Sidorenko, D. S., Goncharov, F. P., Belyaeva, E. S. & Zhimulev, I. F., 1 Mar 2020, In: Chromosoma. 129, 1, p. 25-44 20 p.

    Research output: Contribution to journal › Article › peer-review

  34. Использование гиперспектральной камеры Specim IQ для анализа растений

    Alt, V. V., Gurova, T. A., Elkin, O. V., Klimenko, D. N., Maximov, L. V., Pestunov, I. A., Dubrovskaya, O. A., Genaev, M. A., Erst, T. V., Genaev, K. A., Komyshev, E. G., Khlestkin, V. K. & Afonnikov, D. A., 1 Mar 2020, In: Вавиловский журнал генетики и селекции. 24, 3, p. 259-266 8 p., 6.

    Research output: Contribution to journal › Article › peer-review

  35. Candidate snp markers of atherogenesis significantly shifting the affinity of TATA-binding protein for human gene promoters show stabilizing natural selection as a sum of neutral drift accelerating atherogenesis and directional natural selection slowing it

    Ponomarenko, M., Rasskazov, D., Chadaeva, I., Sharypova, E., Drachkova, I., Oshchepkov, D., Ponomarenko, P., Savinkova, L., Oshchepkova, E., Nazarenko, M. & Kolchanov, N., 5 Feb 2020, In: International Journal of Molecular Sciences. 21, 3, 41 p., 1045.

    Research output: Contribution to journal › Article › peer-review

  36. Computer Simulation of the Evolution of Microbial Population: Overcoming Local Minima When Reaching a Peak on the Fitness Landscape

    Lashin, S. A., Mustafin, Z. S., Klimenko, A. I., Afonnikov, D. A. & Matushkin, Y. G., 1 Feb 2020, In: Russian Journal of Genetics. 56, 2, p. 242-252 11 p.

    Research output: Contribution to journal › Article › peer-review

  37. Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain

    Pavlova, A. S., Ozhegov, G. D., Arapidi, G. P., Butenko, I. O., Fomin, E. S., Alemasov, N. A., Afonnikov, D. A., Yarullina, D. R., Ivanov, V. T., Govorun, V. M. & Kayumov, A. R., 1 Feb 2020, In: Protein Journal. 39, 1, p. 73-84 12 p.

    Research output: Contribution to journal › Article › peer-review

  38. The Effect of Meditation on Comprehension of Statements About One-Self and Others: A Pilot ERP and Behavioral Study

    Savostyanov, A., Tamozhnikov, S., Bocharov, A., Saprygin, A., Matushkin, Y., Lashin, S., Kolpakova, G., Sudobin, K. & Knyazev, G., 9 Jan 2020, In: Frontiers in Human Neuroscience. 13, 12 p., 437.

    Research output: Contribution to journal › Article › peer-review

  39. A mathematical model linking Ca2+-dependent signaling pathway and gene expression regulation in Human Skeletal Muscle

    Akberdin, I. R., Vertyshev, A. Y., Pintus, S. S., Popov, D. V. & Kolpakov, F. A., 1 Jan 2020, In: Mathematical Biology and Bioinformatics. 15, 1, p. 20-39 20 p.

    Research output: Contribution to journal › Article › peer-review

  40. Potential regulatory SNPs in the ATXN7L3B and KRT15 genes are associated with gender-specific colorectal cancer risk

    Leberfarb, E. Y., Degtyareva, A. O., Brusentsov, I. I., Maximov, V. N., Voevoda, M. I., Autenshlus, A. I., Morozov, D. V., Sokolov, A. V. & Merkulova, T. I., Jan 2020, In: Personalized Medicine. 17, 1, p. 43-54 12 p.

    Research output: Contribution to journal › Article › peer-review

  41. Rdbms And Nosql Based Hybrid Technology for Transcriptome Data Structuring and Processing

    Mukhin, A. M., Genaev, M. A., Rasskazov, D. A., Lashin, S. A. & Afonnikov, D. A., 2020, In: Mathematical Biology and Bioinformatics. 15, 2, p. 455-470 16 p.

    Research output: Contribution to journal › Article › peer-review

  42. 2019

  43. The mTOR signaling pathway activity and vitamin d availability control the expression of most autism predisposition genes

    Trifonova, E. A., Klimenko, A. I., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 15 Dec 2019, In: International Journal of Molecular Sciences. 20, 24, 14 p., 6332.

    Research output: Contribution to journal › Article › peer-review

  44. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

    Levitsky, V., Zemlyanskaya, E., Oshchepkov, D., Podkolodnaya, O., Ignatieva, E., Grosse, I., Mironova, V. & Merkulova, T., 2 Dec 2019, In: Nucleic Acids Research. 47, 21, p. e139 14 p.

    Research output: Contribution to journal › Article › peer-review

  45. Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.)

    Ermakov, A., Bobrovskikh, A., Zubairova, U., Konstantinov, D. & Doroshkov, A., 29 Nov 2019, In: PeerJ. 7, 11, p. e7791 28 p., e7791.

    Research output: Contribution to journal › Article › peer-review

  46. Phylostratigraphic analysis shows the earliest origination of the abiotic stress associated genes in a. Thaliana

    Mustafin, Z. S., Zamyatin, V. I., Konstantinov, D. K., Doroshkov, A. V., Lashin, S. A. & Afonnikov, D. A., 22 Nov 2019, In: Genes. 10, 12, 27 p., 963.

    Research output: Contribution to journal › Article › peer-review

  47. Behavior and Depression Gene Networks Reconstruction and Analysis

    Ivanov, R. A., Zamyatin, V. I., Klimenko, A. I., Astakhova, T. N., Matushkin, Y. G., Savostyanov, A. N. & Lashin, S. A., Oct 2019, SIBIRCON 2019 - International Multi-Conference on Engineering, Computer and Information Sciences, Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 361-365 5 p. 8958072. (SIBIRCON 2019 - International Multi-Conference on Engineering, Computer and Information Sciences, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  48. Reconstruction and Analysis of Gene Networks of Human Neurotransmitter Systems Reveal Genes with Contentious Manifestation for Anxiety, Depression, and Intellectual Disabilities

    Ivanov, R., Zamyatin, V., Klimenko, A., Matushkin, Y., Savostyanov, A. & Lashin, S., 11 Sept 2019, In: Genes. 10, 9, 14 p., 699.

    Research output: Contribution to journal › Article › peer-review

  49. Candidate SNP Markers of Atherosclerosis That May Significantly Change the Affinity of the TATA-Binding Protein for the Human Gene Promoters

    Ponomarenko, M. P., Rasskazov, D. A., Chadaeva, I. V., Sharypova, E. B., Drachkova, I. A., Ponomarenko, P. M., Oshchepkova, E. A., Savinkova, L. K. & Kolchanov, N. A., 1 Sept 2019, In: Russian Journal of Genetics. 55, 9, p. 1137-1151 15 p.

    Research output: Contribution to journal › Article › peer-review

  50. Shaping Ethylene Response: The Role of EIN3/EIL1 Transcription Factors

    Dolgikh, V. A., Pukhovaya, E. M. & Zemlyanskaya, E. V., 26 Aug 2019, In: Frontiers in Plant Science. 10, p. 1030 9 p., 1030.

    Research output: Contribution to journal › Review article › peer-review

  51. Candidate SNP-markers of rheumatoid arthritis that can significantly alter the affinity of the TATA-binding protein for human gene promoters

    Chadaeva, I. V., Rasskazov, D. A., Sharypova, E. B., Drachkova, I. A., Oshchepkova, E. A., Savinkova, L. K., Ponomarenko, P. M., Ponomarenko, M. P., Kolchanov, N. A. & Kozlov, V. A., 1 Aug 2019, In: Вавиловский журнал генетики и селекции. 23, 8, p. 1047-1058 12 p.

    Research output: Contribution to journal › Article › peer-review

  52. Single nucleotide polymorphism rs110861313 in the intergenic region of chromosome 23 is associated with the development of leukosis in the Russian Black Pied cattle

    Aitnazarov, R. B., Ignatieva, E. V., Agarkova, T. A., Dvoeglazov, N. G., Osipova, N. A., Khramtsov, V. V. & Yudin, N. S., 1 Aug 2019, In: Вавиловский журнал генетики и селекции. 23, 8, p. 999-1005 7 p.

    Research output: Contribution to journal › Article › peer-review

  53. Morphometry of the wheat spike by analyzing 2D images

    Genaev, M. A., Komyshev, E. G., Smirnov, N. V., Kruchinina, Y. V., Goncharov, N. P. & Afonnikov, D. A., 17 Jul 2019, In: Agronomy. 9, 7, 390.

    Research output: Contribution to journal › Article › peer-review

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