1. 2022
  2. Modular Representation of Physiologically Based Pharmacokinetic Models: Nanoparticle Delivery to Solid Tumors in Mice as an Example

    Kutumova, E., Akberdin, I., Kiselev, I., Sharipov, R. & Kolpakov, F., 1 Apr 2022, In: Mathematics. 10, 7, 20 p., 1176.

    Research output: Contribution to journalArticlepeer-review

  3. Comparative analysis of alignment-free genome clustering and whole genome alignment-based phylogenomic relationship of coronaviruses

    Kirichenko, A. D., Poroshina, A. A., Sherbakov, D. Y., Sadovsky, M. G. & Krutovsky, K. V., Mar 2022, In: PLoS ONE. 17, 3, e0264640.

    Research output: Contribution to journalArticlepeer-review

  4. Isolation and transcriptome analysis of a biotechnologically promising Black Sea protist, Thraustochytrium aureum ssp. Strugatskii

    Konstantinov, D. K., Menzorov, A., Krivenko, O. & Doroshkov, A. V., Mar 2022, In: PeerJ. 10, e12737.

    Research output: Contribution to journalArticlepeer-review

  5. Classification of Fruit Flies by Gender in Images Using Smartphones and the YOLOv4-Tiny Neural Network

    Genaev, M. A., Komyshev, E. G., Shishkina, O. D., Adonyeva, N. V., Karpova, E. K., Gruntenko, N. E., Zakharenko, L. P., Koval, V. S. & Afonnikov, D. A., 1 Feb 2022, In: Mathematics. 10, 3, 295.

    Research output: Contribution to journalArticlepeer-review

  6. Salicylic Acid in Root Growth and Development

    Bagautdinova, Z. Z., Omelyanchuk, N., Tyapkin, A. V., Kovrizhnykh, V. V., Lavrekha, V. V. & Zemlyanskaya, E. V., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2228.

    Research output: Contribution to journalReview articlepeer-review

  7. Agent-Based Modeling of Autosomal Recessive Deafness 1A (DFNB1A) Prevalence with Regard to Intensity of Selection Pressure in Isolated Human Population

    Romanov, G. P., Smirnova, A. A., Zamyatin, V. I., Mukhin, A. M., Kazantsev, F. V., Pshennikova, V. G., Teryutin, F. M., Solovyev, A. V., Fedorova, S. A., Posukh, O. L., Lashin, S. A. & Barashkov, N. A., Feb 2022, In: Biology. 11, 2, 257.

    Research output: Contribution to journalArticlepeer-review

  8. The functional insight into the geneticsof cardiovascular disease: results from the post-GWAS study

    Bryzgalov, L. O., Korbolina, E. E., Damarov, I. S. & Merkulova, T., Feb 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 1, p. 65-73 9 p., 8.

    Research output: Contribution to journalArticlepeer-review

  9. ДНК-метабаркодинг бентосных водорослей и ассоциированных с ними эукариот оз. Байкал в условиях быстрых экологических изменений

    Bukin, Y. S., Kravtsova, L. S., Peretolchina, T. E., Fedotov, A. P., Tupikin, A. E., Kabilov, M. R., Sherbakov, D. Y. & Mincheva, E., Feb 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 1, p. 86-95 10 p., 10.

    Research output: Contribution to journalArticlepeer-review

  10. Abnormal mTOR Activity in Pediatric Autoimmune Neuropsychiatric and MIA-Associated Autism Spectrum Disorders

    Trifonova, E. A., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 16 Jan 2022, In: International Journal of Molecular Sciences. 23, 2, 967.

    Research output: Contribution to journalReview articlepeer-review

  11. Relationship between the characteristics of bread wheat grains, storage time and germination

    Afonnikov, D. A., Komyshev, E. G., Efimov, V. M., Genaev, M. A., Koval, V. S., Gierke, P. U. & Börner, A., 1 Jan 2022, In: Plants. 11, 1, 35.

    Research output: Contribution to journalArticlepeer-review

  12. ICBrainDB: An Integrated Database for Finding Associations between Genetic Factors and EEG Markers of Depressive Disorders

    Ivanov, R., Kazantsev, F., Zavarzin, E., Klimenko, A., Milakhina, N., Matushkin, Y. G., Savostyanov, A. & Lashin, S., Jan 2022, In: Journal of Personalized Medicine. 12, 1, 53.

    Research output: Contribution to journalArticlepeer-review

  13. Wheat yield estimation based on analysis of UAV images at low altitude

    Kozhekin, M., Genaev, M., Koval, V., Slobodchikov, A. & Afonnikov, D., 2022, In: BIO Web of Conferences. 47, p. 05006

    Research output: Contribution to journalArticlepeer-review

  14. 2021
  15. NLR genes related transcript sets in potato cultivars bearing genetic material of wild Mexican solanum species

    Kochetov, A. V., Afonnikov, D. A., Shmakov, N., Vasiliev, G. V., Antonova, O. Y., Shatskaya, N. V., Glagoleva, A. Y., Ibragimova, S. M., Khiutti, A., Afanasenko, O. S. & Gavrilenko, T. A., Dec 2021, In: Agronomy. 11, 12, 2426.

    Research output: Contribution to journalArticlepeer-review

  16. The mitochondrial genome of a freshwater pelagic amphipod Macrohectopus branickii is among the longest in Metazoa

    Romanova, E. V., Bukin, Y. S., Mikhailov, K. V., Logacheva, M. D., Aleoshin, V. V. & Sherbakov, D. Y., Dec 2021, In: Genes. 12, 12, 2030.

    Research output: Contribution to journalArticlepeer-review

  17. Mechanisms of stress response in the root stem cell niche

    Ubogoeva, E. V., Zemlyanskaya, E. V., Xu, J. & Mironova, V., 13 Oct 2021, In: Journal of Experimental Botany. 72, 19, p. 6746-6754 9 p.

    Research output: Contribution to journalReview articlepeer-review

  18. A modular mathematical model of exercise-induced changes in metabolism, signaling, and gene expression in human skeletal muscle

    Akberdin, I. R., Kiselev, I. N., Pintus, S. S., Sharipov, R. N., Vertyshev, A. Y., Vinogradova, O. L., Popov, D. V. & Kolpakov, F. A., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 19, 10353.

    Research output: Contribution to journalArticlepeer-review

  19. Leave or stay: Simulating motility and fitness of microorganisms in dynamic aquatic ecosystems

    Klimenko, A., Matushkin, Y., Kolchanov, N. & Lashin, S., Oct 2021, In: Biology. 10, 10, 1019.

    Research output: Contribution to journalArticlepeer-review

  20. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journalReview articlepeer-review

  21. Prioritization of biological processes based on the reconstruction and analysis of associative gene networks describing the response of plants to adverse environmental factors

    Demenkov, P. S., Oshchepkova, E. A., Ivanisenko, T. V. & Ivanisenko, V. A., Sept 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 5, p. 580-592 13 p., 13.

    Research output: Contribution to journalArticlepeer-review

  22. Комплексный анализ влияния аллельного полиморфизма 5-HTTLPR на поведенческие и нейрофизиологические показатели исполнительного контроля у людей из разных этнических групп в Сибири

    Savostyanov, A. N., Bazovkina, D. V., Lashin, S. A., Tamozhnikov, S. S., Saprygin, A. E., Astakhova, T. N., Kavai-Ool, U. N., Borisova, N. V. & Karpova, A. G., Sept 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 5, p. 593-602 10 p., 14.

    Research output: Contribution to journalArticlepeer-review

  23. Image-based wheat fungi diseases identification by deep learning

    Genaev, M. A., Skolotneva, E. S., Gultyaeva, E. I., Orlova, E. A., Bechtold, N. P. & Afonnikov, D. A., Aug 2021, In: Plants. 10, 8, 1500.

    Research output: Contribution to journalArticlepeer-review

  24. A Catalog of Human Genes Associated With Pathozoospermia and Functional Characteristics of These Genes

    Ignatieva, E. V., Osadchuk, A. V., Kleshchev, M. A., Bogomolov, A. G. & Osadchuk, L. V., 5 Jul 2021, In: Frontiers in Genetics. 12, 662770.

    Research output: Contribution to journalArticlepeer-review

  25. A panel of rsnps demonstrating allelic asymmetry in both chip-seq and rna-seq data and the search for their phenotypic outcomes through analysis of degs

    Korbolina, E. E., Bryzgalov, L. O., Ustrokhanova, D. Z., Postovalov, S. N., Poverin, D. V., Damarov, I. S. & Merkulova, T. I., 2 Jul 2021, In: International Journal of Molecular Sciences. 22, 14, 7240.

    Research output: Contribution to journalArticlepeer-review

  26. Experimental comparison of the in vivo efficacy of two novel anticancer therapies

    Ruzanova, V. S., Proskurina, A. S., Ritter, G. S., Efremov, Y. R., Nikolin, V. P., Popova, N. A., Naprimerov, V. A., Dolgova, E. V., Potter, E. A., Kirikovich, S. S., Levites, E. V., Mustafin, Z. S., Lashin, S. A., Burakova, E. A., Stetsenko, D. A., Ostanin, A. A., Chernykh, E. R. & Bogachev, S. S., Jul 2021, In: Anticancer research. 41, 7, p. 3371-3387 17 p.

    Research output: Contribution to journalArticlepeer-review

  27. Regulatory SPNs: Altered transcription factor binding sites implicated in complex traits and diseases: Altered Transcription Factor Binding Sites Implicated in Complex Traits and Diseases

    Degtyareva, A. O., Antontseva, E. V. & Merkulova, T. I., 16 Jun 2021, In: International Journal of Molecular Sciences. 22, 12, 6454.

    Research output: Contribution to journalArticlepeer-review

  28. Genome-wide atlas of promoter expression reveals contribution of transcribed regulatory elements to genetic control of disuse-mediated atrophy of skeletal muscle

    Pintus, S. S., Akberdin, I. R., Yevshin, I., Makhnovskii, P., Tyapkina, O., Nigmetzyanov, I., Nurullin, L., Devyatiyarov, R., Shagimardanova, E., Popov, D., Kolpakov, F. A., Gusev, O. & Gazizova, G. R., Jun 2021, In: Biology. 10, 6, 557.

    Research output: Contribution to journalArticlepeer-review

  29. A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis

    Bobrovskikh, A., Doroshkov, A., Mazzoleni, S., Cartenì, F., Giannino, F. & Zubairova, U., 21 May 2021, In: Frontiers in Genetics. 12, p. 652974 652974.

    Research output: Contribution to journalReview articlepeer-review

  30. Do autism spectrum and autoimmune disorders share predisposition gene signature due to mtor signaling pathway controlling expression?

    Trifonova, E. A., Klimenko, A. I., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 16 May 2021, In: International Journal of Molecular Sciences. 22, 10, 5248.

    Research output: Contribution to journalArticlepeer-review

  31. Comparative transcriptome profiling of a resistant vs susceptible bread wheat (Triticum aestivum L.) cultivar in response to water deficit and cold stress

    Konstantinov, D. K., Zubairova, U. S., Ermakov, A. A. & Doroshkov, A. V., May 2021, In: PeerJ. 9, p. e11428 e11428.

    Research output: Contribution to journalArticlepeer-review

  32. Вироид веретеновидности клубней картофеля

    Kochetov, A. V., Pronozin, A. Y., Shatskaya, N. V., Afonnikov, D. A. & Afanasenko, O. S., May 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 269-275 7 p., 3.

    Research output: Contribution to journalArticlepeer-review

  33. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

    Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

    Research output: Contribution to journalArticlepeer-review

  34. Технологии поиска и исследования потенциально осциллирующих ферментативных систем

    Lakhova, T. N., Kazantsev, F. V., Lashin, S. A. & Matushkin, Y. G., Mar 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 318-330 13 p., 9.

    Research output: Contribution to journalArticlepeer-review

  35. Определение количественного содержания хлорофиллов в листьях по спектрам отражения алгоритмом случайного леса

    Urbanovich, E. A., Afonnikov, D. A. & Nikolaev, S. V., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 64-70 7 p., 7.

    Research output: Contribution to journalArticlepeer-review

  36. Филостратиграфический анализ генных сетей заболеваний человека

    Mustafin, Z. S., Lashin, S. A. & Matushkin, Y. G., Jan 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 46-56 11 p., 5.

    Research output: Contribution to journalArticlepeer-review

  37. Hypoxia exerts oxidative stress and changes in expression of antioxidant enzyme genes in gills of Mytilus galloprovincialis (Lamarck, 1819)

    Andreyeva, A. Y., Gostyukhina, O. L., Kladchenko, E. S., Afonnikov, D. A., Rasskazov, D. A., Lantushenko, A. O. & Vodiasova, E. A., 2021, In: Marine Biology Research. 17, 4, p. 369-379 11 p.

    Research output: Contribution to journalArticlepeer-review

  38. The Web Platform for Storing Biotechnologically Significant Properties of Bacterial Strains

    Mukhin, A. M., Kazantsev, F. V., Klimenko, A. I., Lakhova, T. N., Demenkov, P. S. & Lashin, S. A., 2021, Parallel Computing Technologies - 16th International Conference, PaCT 2021, Proceedings. Malyshkin, V. (ed.). Springer, p. 445-450 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12942 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  39. 2020
  40. Nucleosome positioning around transcription start site correlates with gene expression only for active chromatin state in drosophila interphase chromosomes

    Levitsky, V. G., Zykova, T. Y., Moshkin, Y. M. & Zhimulev, I. F., 1 Dec 2020, In: International Journal of Molecular Sciences. 21, 23, p. 1-10 10 p., 9282.

    Research output: Contribution to journalArticlepeer-review

  41. A new approach to estimating the prevalence of hereditary hearing loss: An analysis of the distribution of sign language users based on census data in Russia

    Romanov, G. P., Pshennikova, V. G., Lashin, S. A., Solovyev, A. V., Teryutin, F. M., Cherdonova, A. M., Borisova, T. V., Sazonov, N. N., Khusnutdinova, E. K., Posukh, O. L., Fedorova, S. A. & Barashkov, N. A., Nov 2020, In: PLoS ONE. 15, 11 November, p. e0242219 e0242219.

    Research output: Contribution to journalArticlepeer-review

  42. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis

    Freire-Rios, A., Tanaka, K., Crespo, I., Van der Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Roeland Boer, D., Mironova, V. & Weijers, D., 29 Sept 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 39, p. 24557-24566 10 p.

    Research output: Contribution to journalArticlepeer-review

  43. The phylogeny of class b flavoprotein monooxygenases and the origin of the yucca protein family

    Turnaev, I. I., Gunbin, K. V., Suslov, V. V., Akberdin, I. R., Kolchanov, N. A. & Afonnikov, D. A., 1 Sept 2020, In: Plants. 9, 9, p. 1-22 22 p., 1092.

    Research output: Contribution to journalArticlepeer-review

  44. Asymmetric conservation within pairs of co-occurred motifs mediates weak direct binding of transcription factors in chip-seq data

    Levitsky, V., Oshchepkov, D., Zemlyanskaya, E. & Merkulova, T., 21 Aug 2020, In: International Journal of Molecular Sciences. 21, 17, p. 1-22 22 p., 6023.

    Research output: Contribution to journalArticlepeer-review

  45. The Effects of Chronic Stress on Brain Myelination in Humans and in Various Rodent Models

    Antontseva, E., Bondar, N., Reshetnikov, V. & Merkulova, T., 10 Aug 2020, In: Neuroscience. 441, p. 226-238 13 p.

    Research output: Contribution to journalReview articlepeer-review

  46. Subcellular compartmentalization of the plant antioxidant system: an integrated overview

    Bobrovskikh, A., Zubairova, U., Kolodkin, A. & Doroshkov, A., 16 Jul 2020, In: PeerJ. 8, p. e9451 27 p., e9451.

    Research output: Contribution to journalReview articlepeer-review

  47. A genome-scale metabolic model of 2,3-butanediol production by thermophilic bacteria geobacillus icigianus

    Kulyashov, M., Peltek, S. E. & Akberdin, I. R., 1 Jul 2020, In: Microorganisms. 8, 7, p. 1-13 13 p., 1002.

    Research output: Contribution to journalArticlepeer-review

  48. Analysis of color and texture characteristics of cereals on digital images

    Komyshev, E. G., Genaev, M. A. & Afonnikov, D. A., Jul 2020, In: Вавиловский журнал генетики и селекции. 24, 4, p. 340-347 8 p.

    Research output: Contribution to journalReview articlepeer-review

  49. Application of neural networks to image recognition of wheat rust diseases

    Genaev, M., Ekaterina, S. & Afonnikov, D., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 40-42 3 p. 9214703. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  50. GPU Based Composite Elements Discovery in Large DNADatasets

    Vishnevsky, O., Bocharnikov, A. & Kolchanov, N., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 135-138 4 p. 9214777. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

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