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  1. 2023

  2. Impact of Negative Feedbacks on De Novo Pyrimidines Biosynthesis in Escherichia coli

    Akberdin, I. R., Kozlov, K. N., Kazantsev, F. V., Fadeev, S. I., Likhoshvai, V. A. & Khlebodarova, T. M., 2 Mar 2023, In: International Journal of Molecular Sciences. 24, 5, 4806.

    Research output: Contribution to journal › Article › peer-review

  3. Three Cycles of Continuous Propagation of a Severe PSTVd Strain NicTr-3 in Solanum lycopersicum cv. Rutgers Resulted in Its Attenuation and Very Mild Disease Symptoms in Potato

    Kochetov, A. V., Shmakov, N., Afonnikov, D. A., Vasiliev, G. V., Shatskaya, N. V., Egorova, A. A., Mironenko, N. V., Lashina, N. M., Khiutti, A. V. & Afanasenko, O. S., Mar 2023, In: Agronomy. 13, 3, 684.

    Research output: Contribution to journal › Article › peer-review

  4. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

  5. Trait-Based Method of Quantitative Assessment of Ecological Functional Groups in the Human Intestinal Microbiome

    Kropochev, A. I., Lashin, S. A., Matushkin, Y. G. & Klimenko, A. I., 11 Jan 2023, In: Biology. 12, 1, 115.

    Research output: Contribution to journal › Article › peer-review

  6. Antitumor efficacy of multi-target in situ vaccinations with CpG oligodeoxynucleotides, anti-OX40, anti-PD1 antibodies, and aptamers

    Proskurina, A. S., Рузанова, В. С., Риттер, Г. С., Ефремов, Я. Р., Mustafin, Z. S., Лашин, С. А., Буракова, Е. А., Фокина, А. А., Zatsepin, T. S., Стеценко, Д. А., Леплина, О. Ю., Останин, А. А., Черных, Е. Р. & Bogachev, S. S., 2023, In: Journal of Biomedical Research. 37, 3, p. 194-212 19 p.

    Research output: Contribution to journal › Article › peer-review

  7. Image-based classification of wheat spikes by glume pubescence using convolutional neural networks

    Artemenko, N. V., Genaev, M. A., Epifanov, R. U., Komyshev, E. G., Kruchinina, Y. V., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 2023, In: Frontiers in Plant Science. 14, 16 p., 1336192.

    Research output: Contribution to journal › Article › peer-review

  8. 2022

  9. Algorithm for the Reconstruction of Mathematical Frame Models of Bacterial Transcription Regulation

    Lakhova, T. N., Kazantsev, F. V., Mukhin, A. M., Kolchanov, N. A., Matushkin, Y. G. & Lashin, S. A., Dec 2022, In: Mathematics. 10, 23, 4480.

    Research output: Contribution to journal › Article › peer-review

  10. Plasma metabolomics and gene regulatory networks analysis reveal the role of nonstructural SARS-CoV-2 viral proteins in metabolic dysregulation in COVID-19 patients

    Ivanisenko, V. A., Gaisler, E. V., Basov, N. V., Rogachev, A. D., Cheresiz, S. V., Ivanisenko, T. V., Demenkov, P. S., Mishchenko, E. L., Khripko, O. P., Khripko, Y. I., Voevoda, S. M., Karpenko, T. N., Velichko, A. J., Voevoda, M. I., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2022, In: Scientific Reports. 12, 1, 12 p., 19977.

    Research output: Contribution to journal › Article › peer-review

  11. The New Version of the ANDDigest Tool with Improved AI-Based Short Names Recognition

    Ivanisenko, T. V., Demenkov, P. S., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2022, In: International Journal of Molecular Sciences. 23, 23, 14934.

    Research output: Contribution to journal › Article › peer-review

  12. Компьютерный анализ особенностей регуляции гиперметилированных маркерных генов гепатокарциномы вирусными белками гепатита С

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Lavrik, I. N. & Ivanisenko, V. A., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 733-742 10 p., 2.

    Research output: Contribution to journal › Article › peer-review

  13. Контекстные сигналы в митохондриальных микроРНК млекопитающих

    Vishnevsky, O. V., Vorozheykin, P. S. & Titov, I. I., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 819-825 7 p., 12.

    Research output: Contribution to journal › Article › peer-review

  14. Молекулярные механизмы детерминации клеток сосудистой системы корня Arabidopsis thaliana L

    Sidorenko, A. D., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 721-732 12 p., 1.

    Research output: Contribution to journal › Article › peer-review

  15. Свойства малого мира научных организаций определяют динамику публикационной активности в области миРНК

    Firsov, A. B. & Titov, I. I., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 826-829 4 p., 13.

    Research output: Contribution to journal › Article › peer-review

  16. Фосфолипазы A2 человека: функциональный и эволюционный анализ

    Turnaev, I. I., Bocharnikova, M. E. & Afonnikov, D. A., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 787-797 11 p., 8.

    Research output: Contribution to journal › Article › peer-review

  17. Genomic analysis reveals cryptic diversity in aphelids and sheds light on the emergence of Fungi

    Mikhailov, K. V., Karpov, S. A., Letcher, P. M., Lee, P. A., Logacheva, M. D., Penin, A. A., Nesterenko, M. A., Pozdnyakov, I. R., Potapenko, E. V., Sherbakov, D. Y., Panchin, Y. V. & Aleoshin, V. V., 7 Nov 2022, In: Current Biology. 32, 21, p. 4607-4619.e7 21 p.

    Research output: Contribution to journal › Article › peer-review

  18. Physiologically Based Pharmacokinetic Modeling of Nanoparticle Biodistribution: A Review of Existing Models, Simulation Software, and Data Analysis Tools

    Кутумова, Е. О., Акбердин, И. Р., Киселев, И. Н., Шарипов, Р. Н., Егорова, В. С., Сырочева, А. О., Parodi, A., Замятнин, А. А. & Колпаков, Ф. А., 19 Oct 2022, In: International Journal of Molecular Sciences. 23, 20, 22 p., 12560.

    Research output: Contribution to journal › Review article › peer-review

  19. Bioinformatic Assessment of Factors Affecting the Correlation between Protein Abundance and Elongation Efficiency in Prokaryotes

    Korenskaia, A. E., Matushkin, Y. G., Lashin, S. A. & Klimenko, A. I., Oct 2022, In: International Journal of Molecular Sciences. 23, 19, 11996.

    Research output: Contribution to journal › Article › peer-review

  20. Genetic Regulation of Morphogenesis of Drosophila melanogaster Mechanoreceptors

    Furman, D. P. & Bukharina, T. A., 6 Sept 2022, In: Russian Journal of Developmental Biology. 53, 4, p. 239-251 13 p.

    Research output: Contribution to journal › Article › peer-review

  21. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  22. Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

    Levitsky, V. G., Mukhin, A. M., Oshchepkov, D. Y., Zemlyanskaya, E. V. & Lashin, S. A., 11 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8981.

    Research output: Contribution to journal › Article › peer-review

  23. QTL Analysis for Bread Wheat Seed Size, Shape and Color Characteristics Estimated by Digital Image Processing

    Arif, M. A. R., Komyshev, E. G., Genaev, M. A., Koval, V. S., Shmakov, N. A., Börner, A. & Afonnikov, D. A., Aug 2022, In: Plants. 11, 16, 2105.

    Research output: Contribution to journal › Article › peer-review

  24. Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis

    Tsukanov, A. V., Mironova, V. V. & Levitsky, V. G., 28 Jul 2022, In: Frontiers in Plant Science. 13, 938545.

    Research output: Contribution to journal › Article › peer-review

  25. BioUML—towards a universal research platform

    Колпаков, Ф., Акбердин, И. Р., Киселев, И., Колмыков, С. К., Кондрахин, Ю., Куляшов, М. А., Кутумова, Е., Пинтус, С. С., Рябова, А., Шарипов, Р. Н., Евшин, И., Жатченко, С. & Кель, А., 5 Jul 2022, In: Nucleic Acids Research. 50, W1, p. W124-W131 8 p.

    Research output: Contribution to journal › Article › peer-review

  26. Multicompartmental Mathematical Model of SARS-CoV-2 Distribution in Human Organs and Their Treatment

    Afonyushkin, V. N., Акбердин, И. Р., Kozlova, Y., Щукин, И. А., Mironova, T., Bobikova, A., Cherepushkina, V., Donchenko, N., Poletaeva, Y. E. & Колпаков, Ф., 1 Jun 2022, In: Mathematics. 10, 11, 1925.

    Research output: Contribution to journal › Article › peer-review

  27. Particle-Based Imaging Tools Revealing Water Flows in Maize Nodal Vascular Plexus

    Zubairova, U. S., Kravtsova, A. Y., Romashchenko, A. V., Pushkareva, A. A. & Doroshkov, A. V., 1 Jun 2022, In: Plants. 11, 12, 1533.

    Research output: Contribution to journal › Article › peer-review

  28. Modular Representation of Physiologically Based Pharmacokinetic Models: Nanoparticle Delivery to Solid Tumors in Mice as an Example

    Kutumova, E., Akberdin, I., Kiselev, I., Sharipov, R. & Kolpakov, F., 1 Apr 2022, In: Mathematics. 10, 7, 20 p., 1176.

    Research output: Contribution to journal › Article › peer-review

  29. Comparative analysis of alignment-free genome clustering and whole genome alignment-based phylogenomic relationship of coronaviruses

    Kirichenko, A. D., Poroshina, A. A., Sherbakov, D. Y., Sadovsky, M. G. & Krutovsky, K. V., Mar 2022, In: PLoS ONE. 17, 3, e0264640.

    Research output: Contribution to journal › Article › peer-review

  30. Isolation and transcriptome analysis of a biotechnologically promising Black Sea protist, Thraustochytrium aureum ssp. Strugatskii

    Konstantinov, D. K., Menzorov, A., Krivenko, O. & Doroshkov, A. V., Mar 2022, In: PeerJ. 10, e12737.

    Research output: Contribution to journal › Article › peer-review

  31. Classification of Fruit Flies by Gender in Images Using Smartphones and the YOLOv4-Tiny Neural Network

    Genaev, M. A., Komyshev, E. G., Shishkina, O. D., Adonyeva, N. V., Karpova, E. K., Gruntenko, N. E., Zakharenko, L. P., Koval, V. S. & Afonnikov, D. A., 1 Feb 2022, In: Mathematics. 10, 3, 295.

    Research output: Contribution to journal › Article › peer-review

  32. Salicylic Acid in Root Growth and Development

    Bagautdinova, Z. Z., Omelyanchuk, N., Tyapkin, A. V., Kovrizhnykh, V. V., Lavrekha, V. V. & Zemlyanskaya, E. V., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2228.

    Research output: Contribution to journal › Review article › peer-review

  33. Agent-Based Modeling of Autosomal Recessive Deafness 1A (DFNB1A) Prevalence with Regard to Intensity of Selection Pressure in Isolated Human Population

    Romanov, G. P., Smirnova, A. A., Zamyatin, V. I., Mukhin, A. M., Kazantsev, F. V., Pshennikova, V. G., Teryutin, F. M., Solovyev, A. V., Fedorova, S. A., Posukh, O. L., Lashin, S. A. & Barashkov, N. A., Feb 2022, In: Biology. 11, 2, 257.

    Research output: Contribution to journal › Article › peer-review

  34. The functional insight into the geneticsof cardiovascular disease: results from the post-GWAS study

    Bryzgalov, L. O., Korbolina, E. E., Damarov, I. S. & Merkulova, T., Feb 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 1, p. 65-73 9 p., 8.

    Research output: Contribution to journal › Article › peer-review

  35. ДНК-метабаркодинг бентосных водорослей и ассоциированных с ними эукариот оз. Байкал в условиях быстрых экологических изменений

    Bukin, Y. S., Kravtsova, L. S., Peretolchina, T. E., Fedotov, A. P., Tupikin, A. E., Kabilov, M. R., Sherbakov, D. Y. & Mincheva, E., Feb 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 1, p. 86-95 10 p., 10.

    Research output: Contribution to journal › Article › peer-review

  36. Abnormal mTOR Activity in Pediatric Autoimmune Neuropsychiatric and MIA-Associated Autism Spectrum Disorders

    Trifonova, E. A., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 16 Jan 2022, In: International Journal of Molecular Sciences. 23, 2, 967.

    Research output: Contribution to journal › Review article › peer-review

  37. Relationship between the characteristics of bread wheat grains, storage time and germination

    Afonnikov, D. A., Komyshev, E. G., Efimov, V. M., Genaev, M. A., Koval, V. S., Gierke, P. U. & Börner, A., 1 Jan 2022, In: Plants. 11, 1, 35.

    Research output: Contribution to journal › Article › peer-review

  38. ICBrainDB: An Integrated Database for Finding Associations between Genetic Factors and EEG Markers of Depressive Disorders

    Ivanov, R., Kazantsev, F., Zavarzin, E., Klimenko, A., Milakhina, N., Matushkin, Y. G., Savostyanov, A. & Lashin, S., Jan 2022, In: Journal of Personalized Medicine. 12, 1, 53.

    Research output: Contribution to journal › Article › peer-review

  39. Wheat yield estimation based on analysis of UAV images at low altitude

    Kozhekin, M., Genaev, M., Koval, V., Slobodchikov, A. & Afonnikov, D., 2022, In: BIO Web of Conferences. 47, p. 05006

    Research output: Contribution to journal › Article › peer-review

  40. 2021

  41. NLR genes related transcript sets in potato cultivars bearing genetic material of wild Mexican solanum species

    Kochetov, A. V., Afonnikov, D. A., Shmakov, N., Vasiliev, G. V., Antonova, O. Y., Shatskaya, N. V., Glagoleva, A. Y., Ibragimova, S. M., Khiutti, A., Afanasenko, O. S. & Gavrilenko, T. A., Dec 2021, In: Agronomy. 11, 12, 2426.

    Research output: Contribution to journal › Article › peer-review

  42. The mitochondrial genome of a freshwater pelagic amphipod Macrohectopus branickii is among the longest in Metazoa

    Romanova, E. V., Bukin, Y. S., Mikhailov, K. V., Logacheva, M. D., Aleoshin, V. V. & Sherbakov, D. Y., Dec 2021, In: Genes. 12, 12, 2030.

    Research output: Contribution to journal › Article › peer-review

  43. Mechanisms of stress response in the root stem cell niche

    Ubogoeva, E. V., Zemlyanskaya, E. V., Xu, J. & Mironova, V., 13 Oct 2021, In: Journal of Experimental Botany. 72, 19, p. 6746-6754 9 p.

    Research output: Contribution to journal › Review article › peer-review

  44. A modular mathematical model of exercise-induced changes in metabolism, signaling, and gene expression in human skeletal muscle

    Akberdin, I. R., Kiselev, I. N., Pintus, S. S., Sharipov, R. N., Vertyshev, A. Y., Vinogradova, O. L., Popov, D. V. & Kolpakov, F. A., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 19, 10353.

    Research output: Contribution to journal › Article › peer-review

  45. Leave or stay: Simulating motility and fitness of microorganisms in dynamic aquatic ecosystems

    Klimenko, A., Matushkin, Y., Kolchanov, N. & Lashin, S., Oct 2021, In: Biology. 10, 10, 1019.

    Research output: Contribution to journal › Article › peer-review

  46. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journal › Review article › peer-review

  47. Prioritization of biological processes based on the reconstruction and analysis of associative gene networks describing the response of plants to adverse environmental factors

    Demenkov, P. S., Oshchepkova, E. A., Ivanisenko, T. V. & Ivanisenko, V. A., Sept 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 5, p. 580-592 13 p., 13.

    Research output: Contribution to journal › Article › peer-review

  48. Комплексный анализ влияния аллельного полиморфизма 5-HTTLPR на поведенческие и нейрофизиологические показатели исполнительного контроля у людей из разных этнических групп в Сибири

    Savostyanov, A. N., Bazovkina, D. V., Lashin, S. A., Tamozhnikov, S. S., Saprygin, A. E., Astakhova, T. N., Kavai-Ool, U. N., Borisova, N. V. & Karpova, A. G., Sept 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 5, p. 593-602 10 p., 14.

    Research output: Contribution to journal › Article › peer-review

  49. Image-based wheat fungi diseases identification by deep learning

    Genaev, M. A., Skolotneva, E. S., Gultyaeva, E. I., Orlova, E. A., Bechtold, N. P. & Afonnikov, D. A., Aug 2021, In: Plants. 10, 8, 1500.

    Research output: Contribution to journal › Article › peer-review

  50. A Catalog of Human Genes Associated With Pathozoospermia and Functional Characteristics of These Genes

    Ignatieva, E. V., Osadchuk, A. V., Kleshchev, M. A., Bogomolov, A. G. & Osadchuk, L. V., 5 Jul 2021, In: Frontiers in Genetics. 12, 662770.

    Research output: Contribution to journal › Article › peer-review

  51. A panel of rsnps demonstrating allelic asymmetry in both chip-seq and rna-seq data and the search for their phenotypic outcomes through analysis of degs

    Korbolina, E. E., Bryzgalov, L. O., Ustrokhanova, D. Z., Postovalov, S. N., Poverin, D. V., Damarov, I. S. & Merkulova, T. I., 2 Jul 2021, In: International Journal of Molecular Sciences. 22, 14, 7240.

    Research output: Contribution to journal › Article › peer-review

  52. Experimental comparison of the in vivo efficacy of two novel anticancer therapies

    Ruzanova, V. S., Proskurina, A. S., Ritter, G. S., Efremov, Y. R., Nikolin, V. P., Popova, N. A., Naprimerov, V. A., Dolgova, E. V., Potter, E. A., Kirikovich, S. S., Levites, E. V., Mustafin, Z. S., Lashin, S. A., Burakova, E. A., Stetsenko, D. A., Ostanin, A. A., Chernykh, E. R. & Bogachev, S. S., Jul 2021, In: Anticancer research. 41, 7, p. 3371-3387 17 p.

    Research output: Contribution to journal › Article › peer-review

  53. Regulatory SPNs: Altered transcription factor binding sites implicated in complex traits and diseases: Altered Transcription Factor Binding Sites Implicated in Complex Traits and Diseases

    Degtyareva, A. O., Antontseva, E. V. & Merkulova, T. I., 16 Jun 2021, In: International Journal of Molecular Sciences. 22, 12, 6454.

    Research output: Contribution to journal › Article › peer-review

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