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  1. 2024

  2. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Институт цитологии и генетики СО РАН, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  3. Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin in Arabidopsis thaliana L.

    Omelyanchuk, N. A., Lavrekha, V. V., Bogomolov, A. G., Dolgikh, V. A., Sidorenko, A. D. & Zemlyanskaya, E. V., 10 Jul 2024, In: Plants. 13, 14, 1905.

    Research output: Contribution to journal › Article › peer-review

  4. Assembly and Genome Annotation of Different Strains of Apple Fruit Moth Virus (Cydia pomonella granulovirus)

    Лахова, Т. Н., Цыгичко, А., Клименко, А. И., Исмаилов, В., Васильев, Г., Асатурова, А. & Лашин, С. А., Jul 2024, In: International Journal of Molecular Sciences. 25, 13, 7146.

    Research output: Contribution to journal › Article › peer-review

  5. Конвейер обработки гиперспектральных изображений на примере исследования зерен ячменя, содержащих меланин

    Busov, I. D., Genaev, M. A., Komyshev, E. G., Koval, V. S., Zykova, T. E., Glagoleva, A. Y. & Afonnikov, D. A., Jul 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 4, p. 443-455 13 p., 9.

    Research output: Contribution to journal › Article › peer-review

  6. A bird's-eye overview of molecular mechanisms regulating feed intake in chickens—with mammalian comparisons

    Volyanskaya, A. R., Akberdin, I. R., Kulyashov, M. A., Yevshin, I. S., Romanov, M. N., Shagimardanova, E. I., Gusev, O. A. & Kolpakov, F. A., Jun 2024, In: Animal Nutrition. 17, p. 61-74 14 p.

    Research output: Contribution to journal › Review article › peer-review

  7. Enrichment of Grain Anthocyanin Content through Marker-Assisted Breeding for Ant1, Ant2 or HvMyc2 Genes in Barley (Hordeum vulgare L.)

    Kukoeva, T. V., Molobekova, C. A., Totsky, I. V., Vasiliev, G. V., Pronozin, A. Y., Afonnikov, D. A., Khlestkina, E. K. & Shoeva, O. Y., Jun 2024, In: Agronomy. 14, 6, 1231.

    Research output: Contribution to journal › Article › peer-review

  8. Lake Baikal amphipods and their genomes, great and small

    Drozdova, P. B., Madyarova, E. V., Gurkov, A. N., Saranchina, A. E., Romanova, E. V., Petunina, J. V., Peretolchina, T. E., Sherbakov, D. Y. & Timofeyev, M. A., Jun 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 3, p. 317-325 9 p., 6.

    Research output: Contribution to journal › Article › peer-review

  9. Physiologically based pharmacokinetic model for predicting the biodistribution of albumin nanoparticles after induction and recovery from acute lung injury

    Кутумова, Е. О., Акбердин, И. Р., Egorova, V. S., Kolesova, E. P., Parodi, A., Pokrovsky, V. S., Zamyatnin Jr., A. A. & Колпаков, Ф. А., 30 May 2024, In: Heliyon. 10, 10, 16 p., e30962.

    Research output: Contribution to journal › Article › peer-review

  10. Identification of Novel Loci Precisely Modulating Pre-Harvest Sprouting Resistance and Red Color Components of the Seed Coat in T. aestivum L.

    Afonnikova, S. D., Kiseleva, A. A., Fedyaeva, A. V., Komyshev, E. G., Koval, V. S., Afonnikov, D. A. & Salina, E. A., 9 May 2024, In: Plants. 13, 10, 21 p., 1309.

    Research output: Contribution to journal › Article › peer-review

  11. Biochemical, Genetic, and Grain Digital Evaluation of Soft Winter Wheat Varieties with Different Germination Index

    Fedyaeva, A. V., Afonnikova, S. D., Afonnikov, D. A., Smirnova, O. G., Deeva, V. N., Pryanishnikov, A. I. & Salina, E. A., Apr 2024, In: Russian Journal of Plant Physiology. 71, 2, 10 p., 56.

    Research output: Contribution to journal › Article › peer-review

  12. Genetic Mechanisms Regulating Root Cap Cell Renewal in Arabidopsis thaliana L.

    Cherenko, V. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Apr 2024, In: Russian Journal of Plant Physiology. 71, 2, 12 p., 51.

    Research output: Contribution to journal › Article › peer-review

  13. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

    Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

    Research output: Contribution to journal › Article › peer-review

  14. Hormone-regulated expansins: expression, localization, and cell wall biomechanics in Arabidopsis root growth

    Samalova, M., Melnikava, A., Elsayad, K., Peaucelle, A., Gahurova, E., Gumulec, J., Spyroglou, I., Zemlyanskaya, E. V., Ubogoeva, E. V., Balkova, D., Demko, M., Blavet, N., Alexiou, P., Benes, V., Mouille, G. & Hejatko, J., Jan 2024, In: Plant Physiology. 194, 1, p. 209-228 20 p.

    Research output: Contribution to journal › Article › peer-review

  15. Peak Scores Significantly Depend on the Relationships between Contextual Signals in ChIP-Seq Peaks

    Vishnevsky, O. V., Bocharnikov, A. V. & Ignatieva, E. V., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1011.

    Research output: Contribution to journal › Article › peer-review

  16. 2023

  17. State-of the-Art Constraint-Based Modeling of Microbial Metabolism: From Basics to Context-Specific Models with a Focus on Methanotrophs

    Куляшов, М. А., Колмыков, С. К., Хлебодарова, Т. М. & Акбердин, И. Р., 14 Dec 2023, In: Microorganisms. 11, 12, 22 p., 2987.

    Research output: Contribution to journal › Review article › peer-review

  18. Fishing Innate Immune System Properties through the Transcriptomic Single-Cell Data of Teleostei

    Bobrovskikh, A. V., Zubairova, U. S. & Doroshkov, A. V., 12 Dec 2023, In: Biology. 12, 12, 1516.

    Research output: Contribution to journal › Review article › peer-review

  19. Программа расшифровки аббревиатур сущностей в рефератах научных публикаций на основе их контекста (ЭНДДекрипт) / Program for decoding entity abbreviations in abstracts of scientific publications based on their context (ANDDecrypt)

    Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 8 Dec 2023, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2023686851, 16 Nov 2023, Priority date 16 Nov 2023, Priority No. 2023684403

    Research output: Patent › Software registration

  20. DyCeModel: a tool for 1D simulation for distribution of plant hormones controlling tissue patterning

    Azarova, D. S., Omelyanchuk, N. A., Mironova, V. V., Zemlyanskaya, E. V. & Lavrekha, V. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 890-897 8 p.

    Research output: Contribution to journal › Article › peer-review

  21. Gbs-dp: a bioinformatics pipeline for processing data coming from genotyping by sequencing

    Pronozin, A. Y., Salina, E. A. & Afonnikov, D. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 737-745 9 p.

    Research output: Contribution to journal › Article › peer-review

  22. Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium

    Ivanisenko, V. A., Basov, N. V., Makarova, A. A., Venzel, A. S., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Kleshchev, M. A., Gaisler, E. V., Moroz, G. B., Plesko, V. V., Sotnikova, Y. S., Patrushev, Y. V., Lomivorotov, V. V., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 768-775 8 p.

    Research output: Contribution to journal › Article › peer-review

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