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  1. 2024

  2. Root cap border cells as regulators of rhizosphere microbiota

    Omelyanchuk, N. A., Cherenko, V. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 918-926 9 p.

    Research output: Contribution to journal › Article › peer-review

  3. Search for and functional annotation of multi-domain PLA2 family proteins in flatworms

    Bocharnikova, M. E., Turnaev, I. I. & Afonnikov, D. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 854-863 10 p.

    Research output: Contribution to journal › Article › peer-review

  4. Программа для проведения филостратиграфического анализа генных сетей Homo sapiens, полученных с помощью ANDSystem (ЭНДФилострат) / A program for conducting phylostratigraphic analysis of Homo sapiens gene networks obtained using ANDSystem (ANDPhylostrat)

    Яцык, И. В., Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 27 Nov 2024, Patent No. 2024688299, 24 Oct 2024, Priority date 24 Oct 2024, Priority No. 2024685094

    Research output: Patent › Software registration

  5. Targeting type I DED interactions at the DED filament serves as a sensitive switch for cell fate decisions

    König, C., Ivanisenko, N. V., Hillert-Richter, L. K., Namjoshi, D., Natu, K., Espe, J., Reinhold, D., Kolchanov, N. A., Ivanisenko, V. A., Kähne, T., Bose, K. & Lavrik, I. N., 21 Nov 2024, In: Cell Chemical Biology. 31, 11, p. 1969-1985.e6 24 p.

    Research output: Contribution to journal › Article › peer-review

  6. Design of Ctenophore Ca2+-Regulated Photoprotein Berovin Capable of Being Converted into Active Protein Under Physiological Conditions: Computational and Experimental Approaches

    Burakova, L. P., Ivanisenko, N. V., Rukosueva, N. V., Ivanisenko, V. A. & Vysotski, E. S., 19 Nov 2024, In: Life. 14, 11, 1508.

    Research output: Contribution to journal › Article › peer-review

  7. Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

    Yamoune, A., Zdarska, M., Depaepe, T., Rudolfova, A., Skalak, J., Berendzen, K. W., Mira-Rodado, V., Fitz, M., Pekarova, B., Nicolas Mala, K. L., Tarr, P., Spackova, E., Tomovicova, L., Parizkova, B., Franczyk, A., Kovacova, I., Dolgikh, V., Zemlyanskaya, E., Pernisova, M., Novak, O., & 4 othersMeyerowitz, E., Harter, K., Van Der Straeten, D. & Hejatko, J., 11 Nov 2024, In: Plant Communications. 5, 11, 17 p., 101013.

    Research output: Contribution to journal › Article › peer-review

  8. An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

    Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

    Research output: Contribution to journal › Article › peer-review

  9. Image-Based Quantitative Analysis of Epidermal Morphology in Wild Potato Leaves

    Zubairova, U. S., Fomin, I. N., Koloshina, K. A., Barchuk, A. I., Erst, T. V., Chalaya, N. A., Gerasimova, S. V. & Doroshkov, A. V., 1 Nov 2024, In: Plants. 13, 21, 14 p., 3084.

    Research output: Contribution to journal › Article › peer-review

  10. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journal › Article › peer-review

  11. Primary multistep phosphorelay activation comprises both cytokinin and abiotic stress responses: insights from comparative analysis of Brassica type-A response regulators

    Nicolas Mala, K. L., Skalak, J., Zemlyanskaya, E., Dolgikh, V., Jedlickova, V., Robert, H. S., Havlickova, L., Panzarova, K., Trtilek, M., Bancroft, I. & Hejatko, J., 1 Oct 2024, In: Journal of Experimental Botany. 75, 20, p. 6346-6368 23 p.

    Research output: Contribution to journal › Article › peer-review

  12. Catching the Big Fish in Big Data: A Meta-Analysis of Zebrafish Kidney scRNA-Seq Datasets Highlights Conserved Molecular Profiles of Macrophages and Neutrophils in Vertebrates

    Bobrovskikh, A. V., Zubairova, U. S., Naumenko, L. G. & Doroshkov, A. V., Oct 2024, In: Biology. 13, 10, 773.

    Research output: Contribution to journal › Article › peer-review

  13. Evaluation of the Spike Diversity of Seven Hexaploid Wheat Species and an Artificial Amphidiploid Using a Quadrangle Model Obtained from 2D Images

    Komyshev, E. G., Genaev, M. A., Kruchinina, Y. V., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., Oct 2024, In: Plants. 13, 19, 2736.

    Research output: Contribution to journal › Article › peer-review

  14. Genomic background sequences systematically outperform synthetic ones in de novo motif discovery for ChIP-seq data

    Raditsa, V. V., Tsukanov, A. V., Bogomolov, A. G. & Levitsky, V. G., 1 Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, 15 p., qae090.

    Research output: Contribution to journal › Article › peer-review

  15. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Институт цитологии и генетики СО РАН, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  16. Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin in Arabidopsis thaliana L.

    Omelyanchuk, N. A., Lavrekha, V. V., Bogomolov, A. G., Dolgikh, V. A., Sidorenko, A. D. & Zemlyanskaya, E. V., 10 Jul 2024, In: Plants. 13, 14, 1905.

    Research output: Contribution to journal › Article › peer-review

  17. Assembly and Genome Annotation of Different Strains of Apple Fruit Moth Virus (Cydia pomonella granulovirus)

    Лахова, Т. Н., Цыгичко, А., Клименко, А. И., Исмаилов, В., Васильев, Г., Асатурова, А. & Лашин, С. А., Jul 2024, In: International Journal of Molecular Sciences. 25, 13, 7146.

    Research output: Contribution to journal › Article › peer-review

  18. Конвейер обработки гиперспектральных изображений на примере исследования зерен ячменя, содержащих меланин

    Busov, I. D., Genaev, M. A., Komyshev, E. G., Koval, V. S., Zykova, T. E., Glagoleva, A. Y. & Afonnikov, D. A., Jul 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 4, p. 443-455 13 p., 9.

    Research output: Contribution to journal › Article › peer-review

  19. A bird's-eye overview of molecular mechanisms regulating feed intake in chickens—with mammalian comparisons

    Volyanskaya, A. R., Akberdin, I. R., Kulyashov, M. A., Yevshin, I. S., Romanov, M. N., Shagimardanova, E. I., Gusev, O. A. & Kolpakov, F. A., Jun 2024, In: Animal Nutrition. 17, p. 61-74 14 p.

    Research output: Contribution to journal › Review article › peer-review

  20. Enrichment of Grain Anthocyanin Content through Marker-Assisted Breeding for Ant1, Ant2 or HvMyc2 Genes in Barley (Hordeum vulgare L.)

    Kukoeva, T. V., Molobekova, C. A., Totsky, I. V., Vasiliev, G. V., Pronozin, A. Y., Afonnikov, D. A., Khlestkina, E. K. & Shoeva, O. Y., Jun 2024, In: Agronomy. 14, 6, 1231.

    Research output: Contribution to journal › Article › peer-review

  21. Lake Baikal amphipods and their genomes, great and small

    Drozdova, P. B., Madyarova, E. V., Gurkov, A. N., Saranchina, A. E., Romanova, E. V., Petunina, J. V., Peretolchina, T. E., Sherbakov, D. Y. & Timofeyev, M. A., Jun 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 3, p. 317-325 9 p., 6.

    Research output: Contribution to journal › Article › peer-review

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