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  1. 2024

  2. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journal › Article › peer-review

  3. Computer analysis shows differences between mitochondrial miRNAs and other miRNAs

    Vorozheykin, P. S. & Titov, I. I., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 834-842 9 p.

    Research output: Contribution to journal › Article › peer-review

  4. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  5. Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

    Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

    Research output: Contribution to journal › Article › peer-review

  6. MetArea: a software package for analysis of the mutually exclusive occurrence in pairs of motifs of transcription factor binding sites based on ChIP-seq data

    Levitsky, V. G., Tsukanov, A. V. & Merkulova, T. I., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 822-833 12 p.

    Research output: Contribution to journal › Article › peer-review

  7. Nearly complete genome sequences of the first two identified Colorado potato beetle viruses

    Antonets, M., Bodnev, S., Rotskaya, U., Kosman, E., Tregubchak, T., Bauer, T., Azaev, M., Kryukov, V. & Antonets, D., Dec 2024, In: Scientific Reports. 14, 1, 9 p., 352.

    Research output: Contribution to journal › Article › peer-review

  8. Orthoweb: a software package for evolutionary analysis of gene networks

    Ivanov, R. A., Mukhin, A. M., Kazantsev, F. V., Mustafin, Z. S., Afonnikov, D. A., Matushkin, Y. G. & Lashin, S. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 874-881 8 p.

    Research output: Contribution to journal › Article › peer-review

  9. PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

    Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

    Research output: Contribution to journal › Article › peer-review

  10. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journal › Article › peer-review

  11. Reconstruction and computer analysis of the structural and functional organization of the gene network regulating cholesterol biosynthesis in humans and the evolutionary characteristics of the genes involved in the network

    Mikhailova, A. D., Lashin, S. A., Ivanisenko, V. A., Demenkov, P. S. & Игнатьева, Е. В., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 864-873 10 p.

    Research output: Contribution to journal › Article › peer-review

  12. Reconstruction of gene regulatory networks from single cell transcriptomic data

    Rybakov, M. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 974-981 8 p.

    Research output: Contribution to journal › Article › peer-review

  13. Root cap border cells as regulators of rhizosphere microbiota

    Omelyanchuk, N. A., Cherenko, V. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 918-926 9 p.

    Research output: Contribution to journal › Article › peer-review

  14. Search for and functional annotation of multi-domain PLA2 family proteins in flatworms

    Bocharnikova, M. E., Turnaev, I. I. & Afonnikov, D. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 854-863 10 p.

    Research output: Contribution to journal › Article › peer-review

  15. Программа для проведения филостратиграфического анализа генных сетей Homo sapiens, полученных с помощью ANDSystem (ЭНДФилострат) / A program for conducting phylostratigraphic analysis of Homo sapiens gene networks obtained using ANDSystem (ANDPhylostrat)

    Яцык, И. В., Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 27 Nov 2024, Patent No. 2024688299, 24 Oct 2024, Priority date 24 Oct 2024, Priority No. 2024685094

    Research output: Patent › Software registration

  16. Targeting type I DED interactions at the DED filament serves as a sensitive switch for cell fate decisions

    König, C., Ivanisenko, N. V., Hillert-Richter, L. K., Namjoshi, D., Natu, K., Espe, J., Reinhold, D., Kolchanov, N. A., Ivanisenko, V. A., Kähne, T., Bose, K. & Lavrik, I. N., 21 Nov 2024, In: Cell Chemical Biology. 31, 11, p. 1969-1985.e6 24 p.

    Research output: Contribution to journal › Article › peer-review

  17. Design of Ctenophore Ca2+-Regulated Photoprotein Berovin Capable of Being Converted into Active Protein Under Physiological Conditions: Computational and Experimental Approaches

    Burakova, L. P., Ivanisenko, N. V., Rukosueva, N. V., Ivanisenko, V. A. & Vysotski, E. S., 19 Nov 2024, In: Life. 14, 11, 1508.

    Research output: Contribution to journal › Article › peer-review

  18. Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

    Yamoune, A., Zdarska, M., Depaepe, T., Rudolfova, A., Skalak, J., Berendzen, K. W., Mira-Rodado, V., Fitz, M., Pekarova, B., Nicolas Mala, K. L., Tarr, P., Spackova, E., Tomovicova, L., Parizkova, B., Franczyk, A., Kovacova, I., Dolgikh, V., Zemlyanskaya, E., Pernisova, M., Novak, O., & 4 othersMeyerowitz, E., Harter, K., Van Der Straeten, D. & Hejatko, J., 11 Nov 2024, In: Plant Communications. 5, 11, 17 p., 101013.

    Research output: Contribution to journal › Article › peer-review

  19. An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

    Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

    Research output: Contribution to journal › Article › peer-review

  20. Image-Based Quantitative Analysis of Epidermal Morphology in Wild Potato Leaves

    Zubairova, U. S., Fomin, I. N., Koloshina, K. A., Barchuk, A. I., Erst, T. V., Chalaya, N. A., Gerasimova, S. V. & Doroshkov, A. V., 1 Nov 2024, In: Plants. 13, 21, 14 p., 3084.

    Research output: Contribution to journal › Article › peer-review

  21. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journal › Article › peer-review

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