1. 2026
  2. База данных взаимодействий лекарственных средств терапии сахарного диабета 2 типа и его осложнений

    Иванисенко, Т. В., Деменков, П. С., Гайслер, Е. В., Яцык, И. В. & Иванисенко, В. А., 14 Sept 2026, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2026624399, 31 Aug 2026, Priority date 31 Aug 2026, Priority No. 2026624042

    Research output: Patent › Database registration

  3. База данных лекарственных взаимодействий антигипертензивных средств

    Иванисенко, Т. В., Деменков, П. С., Гайслер, Е. В., Яцык, И. В. & Иванисенко, В. А., 9 Sept 2026, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2026624333, 31 Aug 2026, Priority date 31 Aug 2026, Priority No. 2026624115

    Research output: Patent › Database registration

  4. База данных лекарственных взаимодействий антибактериальных препаратов

    Иванисенко, Т. В., Деменков, П. С., Гайслер, Е. В., Яцык, И. В. & Иванисенко, В. А., 1 Sept 2026, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2026624194, 31 Aug 2026, Priority date 31 Aug 2026, Priority No. 2026624044

    Research output: Patent › Database registration

  5. Cell Structure Segmentation in TEM Images of Murine Skin Melanoma Cells by Deep Learning Model

    Genaev, M. A., Gogaeva, I. S., Taskaeva, I. S., Bgatova, N. P., Kozhekin, M. V., Komyshev, E. G. & Afonnikov, D. A., 26 May 2026, In: Journal of Imaging. 12, 5, 26 p., 215.

    Research output: Contribution to journal › Article › peer-review

  6. Способ определения прогностических признаков заболеваний в электронных медицинских картах

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В. & Гайслер, Е. В., 5 May 2026, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2861523, 30 Sept 2025, Priority date 30 Sept 2025, Priority No. 2025126718

    Research output: Patent › Patent for invention

  7. Diversity of lncRNAs in the pan-transcriptome of maize inbred lines

    Pronozin, A. Y., Shmakov, N. A. & Afonnikov, D. A., 3 Jan 2026, In: BMC Genomics. 27, 1, 15 p.

    Research output: Contribution to journal › Article › peer-review

  8. AIMarkerFinder: AI-Assisted Marker Discovery Based on an Integrated Approach of Autoencoders and Kolmogorov–Arnold Networks

    Demenkov, P. S., Ivanisenko, T. V. & Ivanisenko, V. A., 2026, In: Informatics. 13, 1, 13 p., 2.

    Research output: Contribution to journal › Article › peer-review

  9. Cytokinin-activated DIRIGENT13 promotes lignan synthesis to regulate root growth and abiotic stress tolerance by modulating ROS homeostasis in Arabidopsis

    Melnikava, A., Perreau, F., Paniagua, C., Cheng, S-C., Huang, L-M., Pekarova, B., Berendzen, K. W., Mira-Rodado, V., Citterico, M., Tvrdonova, A., Ubogoeva, E., Dolgikh, V., Zemlyanskaya, E., Glowacki, E. D., Wrzaczek, M., Harter, K., Yang, Y-L., Mouille, G., Arnaud, D. & Hejatko, J., 2026, In: Plant Communications. 19 p., 101972.

    Research output: Contribution to journal › Article › peer-review

  10. 2025
  11. Epigenetic Signatures of Social Defeat Stress Varying Duration

    Bondar, N., Reshetnikov, V., Ritter, P., Ershov, N., Zhukova, N., Kolmykov, S. & Merkulova, T., 19 Dec 2025, In: International Journal of Molecular Sciences. 27, 1, 21 p., 18.

    Research output: Contribution to journal › Article › peer-review

  12. Программа для определения взаимного влияния лекарств «Безопасные лекарства»

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 17 Dec 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025696239, 4 Dec 2025, Priority date 4 Dec 2025, Priority No. 2025695254

    Research output: Patent › Software registration

  13. Генная сеть и база знаний по терморегуляции организма человека

    Ignatieva, E. V., Demenkov, P. S., Bogomolov, A. G., Ivanov, R. A., Lashin, S. A., Mikhailova, A. D., Alekseeva, A. E. & Yudin, N. S., Dec 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 1009-1019 11 p., 9.

    Research output: Contribution to journal › Article › peer-review

  14. База данных влияния факторов повышенной утомляемости, характерных для городской среды, на молекулярно-генетические и фенотипические характеристики организма человека

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 19 Nov 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025625300, 29 Oct 2025, Priority date 29 Oct 2025, Priority No. 2025624676

    Research output: Patent › Database registration

  15. База данных влияния бессонницы, характерной для городской среды, на молекулярно- генетические и фенотипические характеристики организма человека

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 11 Nov 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025625017, 29 Oct 2025, Priority date 29 Oct 2025, Priority No. 2025624647

    Research output: Patent › Database registration

  16. База данных влияния гипоксии, связанной с условиями жизни в городской среде, на молекулярно-генетические, физиологические и фенотипические характеристики организма человека

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 6 Nov 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025624919, 29 Oct 2025, Priority date 29 Oct 2025, Priority No. 2025624660

    Research output: Patent › Database registration

  17. Genetic and Pathogenic Overlaps Between Autism Spectrum Disorder and Alzheimer’s Disease: Evolutionary Features and Opportunities for Drug Repurposing

    Trifonova, E. A., Pashchenko, A. A., Ivanov, R. A., Kochetov, A. V. & Lashin, S. A., 16 Oct 2025, In: International Journal of Molecular Sciences. 26, 20, p. 10066

    Research output: Contribution to journal › Article › peer-review

  18. Analysis of coat texture characteristics of bread wheat grains obtained from digital images

    Avzalov, D. R., Arif, M. A. R., Komyshev, E. G., Koval, V. S., Börner, A. & Afonnikov, D. A., 30 Sept 2025, In: Frontiers in Plant Science. 16, p. 1659548

    Research output: Contribution to journal › Article › peer-review

  19. EBSn, a Robust Synthetic Reporter for Monitoring Ethylene Responses in Plants

    Fernandez‐moreno, J., Fenech, M., Yaschenko, A. E., Zhao, C., Neubauer, M., Davis, H. N., Marchi, A. J., Concannon, R., Keren‐keiserman, A., Reuveni, M., Levitsky, V., Oshchepkov, D., Dolgikh, V., Goldshmidt, A., Ascencio‐ibáñez, J. T., Zemlyanskaya, E., Alonso, J. M. & Stepanova, A. N., 21 Sept 2025, In: Plant Biotechnology Journal.

    Research output: Contribution to journal › Article › peer-review

  20. Functional and evolutionary characteristics of human genes encoding cell surface receptors involved in the regulation of appetite

    Ignatieva, E., Lashin, S., Ivanov, R., Suslov, V., Mikhailova, A. & Kolchanov, N., Sept 2025, In: Journal of integrative bioinformatics. 22, 3, 28 p., 20250023.

    Research output: Contribution to journal › Article › peer-review

  21. New Sights into Bioinformatics of Gene Regulations and Structure

    Anashkina, A. A., Orlova, N. G., Kolchanov, N. A. & Orlov, Y. L., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13

    Research output: Contribution to journal › Article › peer-review

  22. Special Issue “25 Anniversary of Bioinformatics of Genome Regulation and Structure Conference Series”

    Orlov, Y. L., Orlova, N. G., Chen, M. & Kolchanov, N. A., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13, 7 p., 6447.

    Research output: Contribution to journal › Article › peer-review

  23. Counting touching wheat grains in images based on elliptical approximation

    Avzalov, D. R., Komyshev, E. G. & Afonnikov, D. A., Jul 2025, In: Вавиловский журнал генетики и селекции. 29, 4, p. 608-614 7 p., 13.

    Research output: Contribution to journal › Article › peer-review

  24. Deep learning approach to the estimation of the ratio of reproductive modes in a partially clonal population

    Nikolaeva, T. A., Poroshina, A. A. & Sherbakov, D. Y., Jun 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 3, p. 467-473 7 p., 14.

    Research output: Contribution to journal › Article › peer-review

  25. Evolutionary Transcriptomics of Cancer Development

    Ivanov, R., Afonnikov, D., Matushkin, Y. & Lashin, S., 23 May 2025, In: International Journal of Molecular Sciences. 26, 11, 15 p., 5041.

    Research output: Contribution to journal › Article › peer-review

  26. Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

    Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

    Research output: Contribution to journal › Article › peer-review

  27. Plant Detection in RGB Images from Unmanned Aerial Vehicles Using Segmentation by Deep Learning and an Impact of Model Accuracy on Downstream Analysis

    Kozhekin, M. V., Genaev, M. A., Komyshev, E. G., Zavyalov, Z. A. & Afonnikov, D. A., 20 Jan 2025, In: Journal of Imaging. 11, 1, 28.

    Research output: Contribution to journal › Article › peer-review

  28. The Role of Long Noncoding RNAs in Plants

    Pronozin, A. Y. & Afonnikov, D. A., 20 Jan 2025, In: Russian Journal of Genetics. 61, 1, p. 1-18 18 p.

    Research output: Contribution to journal › Article › peer-review

  29. Asymmetry of Motif Conservation Within Their Homotypic Pairs Distinguishes DNA-Binding Domains of Target Transcription Factors in ChIP-Seq Data

    Levitsky, V. G., Raditsa, V. V., Tsukanov, A. V., Mukhin, A. M., Zhimulev, I. F. & Merkulova, T. I., 4 Jan 2025, In: International Journal of Molecular Sciences. 26, 1, 386.

    Research output: Contribution to journal › Article › peer-review

  30. Pharmacological targeting of caspase-8/c-FLIPL heterodimer enhances complex II assembly and elimination of pancreatic cancer cells

    König, C., Ivanisenko, N. V., Ivanisenko, V. A., Kulms, D. & Lavrik, I. N., 3 Jan 2025, In: Communications Biology. 8, 1, 4.

    Research output: Contribution to journal › Article › peer-review

  31. Frame-based mathematical models – a tool for the study of molecular genetic systems

    Kazantsev, F. V., Lashin, S. A. & Matushkin, Y. G., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 8, p. 1288-1294 7 p., 14.

    Research output: Contribution to journal › Article › peer-review

  32. Hedgehog signaling in humans: the HH_Signal_pathway_db knowledge base

    Bukharina, T. A., Bondarenko, A. M. & Furman, D. P., 2025, In: Вавиловский журнал генетики и селекции. 29, 7, p. 978-989 12 p., 6.

    Research output: Contribution to journal › Article › peer-review

  33. Влияние переназначения кодонов на свойства и структуру митохондриальных белков байкальских амфипод

    Yudinceva, A. V., Romanova, E. V., Sherbakov, D. Y. & Bukin, Y. S., 2025, In: Mathematical Biology and Bioinformatics. 20, 1, p. 54-70 17 p.

    Research output: Contribution to journal › Article › peer-review

  34. Исследование инсектицидного и фунгицидного потенциала бактерий эндофитов пшеницы, сои и рапса методами биоинформатического анализа

    Lakhova, T. N., Klimenko, A. I., Vasiliev, G. V., Gyrnets, E. Y., Asaturova, A. M. & Lashin, S. A., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 8, p. 1304-1317 14 p., 16.

    Research output: Contribution to journal › Article › peer-review

  35. Математические модели метаболизма железа: структура и функции

    Melchenko, N. I. & Akberdin, I. R., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 1031-1040 10 p., 11.

    Research output: Contribution to journal › Article › peer-review

  36. Применение программно-информационной системы ANDSystem для поиска мишеней таргетной терапии ревматоидного артрита на основе анализа биологических процессов

    Mishchenko, E. L., Yatsyk, I. V., Demenkov, P. S., Adamovskaya, A. V., Ivanisenko, T. V., Kleshchev, M. A. & Ivanisenko, V. A., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 1020-1030 11 p., 10.

    Research output: Contribution to journal › Article › peer-review

  37. Реконструкция и анализ генной сети регуляции апоптоза при гепатоцеллюлярной карциноме на основе данных scRNA-seq и базы знаний ANDSystem

    Adamovskaya, A. V., Yatsyk, I. V., Kleshchev, M. A., Demenkov, P. S., Ivanisenko, T. V. & Ivanisenko, V. A., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 963-977 15 p., 5.

    Research output: Contribution to journal › Article › peer-review

  38. Роль длинных некодирующих РНК в растениях

    Пронозин, А. Ю. & Афонников, Д. А., 2025, In: Генетика. 61, 1, p. 3-23

    Research output: Contribution to journal › Article › peer-review

  39. 2024
  40. A software module to assess the metabolic potential of mutant strains of the bacterium Corynebacterium glutamicum

    Kazantsev, F. V., Trofimova, M. F., Khlebodarova, T. M., Matushkin, Y. G. & Lashin, S. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 897-903 7 p.

    Research output: Contribution to journal › Article › peer-review

  41. Candidate SNP markers of changes in the expression levels of the human SCN9A gene as a hub gene for pain generation, perception, response and anesthesia

    Dotsenko, P. A., Zolotareva, K. A., Ivanov, R. A., Chadaeva, I. V., Podkolodnyy, N. L., Ivanisenko, V. A., Demenkov, P. S., Lashin, S. A. & Ponomarenko, M. P., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 808-821 14 p.

    Research output: Contribution to journal › Article › peer-review

  42. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journal › Article › peer-review

  43. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journal › Article › peer-review

  44. Computer analysis shows differences between mitochondrial miRNAs and other miRNAs

    Vorozheykin, P. S. & Titov, I. I., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 834-842 9 p.

    Research output: Contribution to journal › Article › peer-review

  45. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  46. Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

    Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

    Research output: Contribution to journal › Article › peer-review

  47. MetArea: a software package for analysis of the mutually exclusive occurrence in pairs of motifs of transcription factor binding sites based on ChIP-seq data

    Levitsky, V. G., Tsukanov, A. V. & Merkulova, T. I., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 822-833 12 p.

    Research output: Contribution to journal › Article › peer-review

  48. Nearly complete genome sequences of the first two identified Colorado potato beetle viruses

    Antonets, M., Bodnev, S., Rotskaya, U., Kosman, E., Tregubchak, T., Bauer, T., Azaev, M., Kryukov, V. & Antonets, D., Dec 2024, In: Scientific Reports. 14, 1, 9 p., 352.

    Research output: Contribution to journal › Article › peer-review

  49. Orthoweb: a software package for evolutionary analysis of gene networks

    Ivanov, R. A., Mukhin, A. M., Kazantsev, F. V., Mustafin, Z. S., Afonnikov, D. A., Matushkin, Y. G. & Lashin, S. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 874-881 8 p.

    Research output: Contribution to journal › Article › peer-review

  50. PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

    Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

    Research output: Contribution to journal › Article › peer-review

  51. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journal › Article › peer-review

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