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  1. 2026

  2. Diversity of lncRNAs in the pan-transcriptome of maize inbred lines

    Pronozin, A. Y., Shmakov, N. A. & Afonnikov, D. A., 3 Jan 2026, In: BMC Genomics. 27, 1, 15 p.

    Research output: Contribution to journal › Article › peer-review

  3. AIMarkerFinder: AI-Assisted Marker Discovery Based on an Integrated Approach of Autoencoders and Kolmogorov–Arnold Networks

    Demenkov, P. S., Ivanisenko, T. V. & Ivanisenko, V. A., 2026, In: Informatics. 13, 1, 13 p., 2.

    Research output: Contribution to journal › Article › peer-review

  4. 2025

  5. Epigenetic Signatures of Social Defeat Stress Varying Duration

    Bondar, N., Reshetnikov, V., Ritter, P., Ershov, N., Zhukova, N., Kolmykov, S. & Merkulova, T., 19 Dec 2025, In: International Journal of Molecular Sciences. 27, 1, 21 p., 18.

    Research output: Contribution to journal › Article › peer-review

  6. Программа для определения взаимного влияния лекарств «Безопасные лекарства»

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 17 Dec 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025696239, 4 Dec 2025, Priority date 4 Dec 2025, Priority No. 2025695254

    Research output: Patent › Software registration

  7. База данных влияния факторов повышенной утомляемости, характерных для городской среды, на молекулярно-генетические и фенотипические характеристики организма человека

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 19 Nov 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025625300, 29 Oct 2025, Priority date 29 Oct 2025, Priority No. 2025624676

    Research output: Patent › Database registration

  8. База данных влияния бессонницы, характерной для городской среды, на молекулярно- генетические и фенотипические характеристики организма человека

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 11 Nov 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025625017, 29 Oct 2025, Priority date 29 Oct 2025, Priority No. 2025624647

    Research output: Patent › Database registration

  9. База данных влияния гипоксии, связанной с условиями жизни в городской среде, на молекулярно-генетические, физиологические и фенотипические характеристики организма человека

    Иванисенко, В. А., Иванисенко, Т. В., Яцык, И. В. & Деменков, П. С., 6 Nov 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025624919, 29 Oct 2025, Priority date 29 Oct 2025, Priority No. 2025624660

    Research output: Patent › Database registration

  10. Genetic and Pathogenic Overlaps Between Autism Spectrum Disorder and Alzheimer’s Disease: Evolutionary Features and Opportunities for Drug Repurposing

    Trifonova, E. A., Pashchenko, A. A., Ivanov, R. A., Kochetov, A. V. & Lashin, S. A., 16 Oct 2025, In: International Journal of Molecular Sciences. 26, 20, p. 10066

    Research output: Contribution to journal › Article › peer-review

  11. Analysis of coat texture characteristics of bread wheat grains obtained from digital images

    Avzalov, D. R., Arif, M. A. R., Komyshev, E. G., Koval, V. S., Börner, A. & Afonnikov, D. A., 30 Sept 2025, In: Frontiers in Plant Science. 16, p. 1659548

    Research output: Contribution to journal › Article › peer-review

  12. EBSn, a Robust Synthetic Reporter for Monitoring Ethylene Responses in Plants

    Fernandez‐moreno, J., Fenech, M., Yaschenko, A. E., Zhao, C., Neubauer, M., Davis, H. N., Marchi, A. J., Concannon, R., Keren‐keiserman, A., Reuveni, M., Levitsky, V., Oshchepkov, D., Dolgikh, V., Goldshmidt, A., Ascencio‐ibáñez, J. T., Zemlyanskaya, E., Alonso, J. M. & Stepanova, A. N., 21 Sept 2025, In: Plant Biotechnology Journal.

    Research output: Contribution to journal › Article › peer-review

  13. New Sights into Bioinformatics of Gene Regulations and Structure

    Anashkina, A. A., Orlova, N. G., Kolchanov, N. A. & Orlov, Y. L., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13

    Research output: Contribution to journal › Article › peer-review

  14. Special Issue “25 Anniversary of Bioinformatics of Genome Regulation and Structure Conference Series”

    Orlov, Y. L., Orlova, N. G., Chen, M. & Kolchanov, N. A., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13, 7 p., 6447.

    Research output: Contribution to journal › Article › peer-review

  15. Counting touching wheat grains in images based on elliptical approximation

    Avzalov, D. R., Komyshev, E. G. & Afonnikov, D. A., Jul 2025, In: Вавиловский журнал генетики и селекции. 29, 4, p. 608-614 7 p., 13.

    Research output: Contribution to journal › Article › peer-review

  16. Deep learning approach to the estimation of the ratio of reproductive modes in a partially clonal population

    Nikolaeva, T. A., Poroshina, A. A. & Sherbakov, D. Y., Jun 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 3, p. 467-473 7 p., 14.

    Research output: Contribution to journal › Article › peer-review

  17. Evolutionary Transcriptomics of Cancer Development

    Ivanov, R., Afonnikov, D., Matushkin, Y. & Lashin, S., 23 May 2025, In: International Journal of Molecular Sciences. 26, 11, 15 p., 5041.

    Research output: Contribution to journal › Article › peer-review

  18. Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

    Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

    Research output: Contribution to journal › Article › peer-review

  19. Plant Detection in RGB Images from Unmanned Aerial Vehicles Using Segmentation by Deep Learning and an Impact of Model Accuracy on Downstream Analysis

    Kozhekin, M. V., Genaev, M. A., Komyshev, E. G., Zavyalov, Z. A. & Afonnikov, D. A., 20 Jan 2025, In: Journal of Imaging. 11, 1, 28.

    Research output: Contribution to journal › Article › peer-review

  20. The Role of Long Noncoding RNAs in Plants

    Pronozin, A. Y. & Afonnikov, D. A., 20 Jan 2025, In: Russian Journal of Genetics. 61, 1, p. 1-18 18 p.

    Research output: Contribution to journal › Article › peer-review

  21. Asymmetry of Motif Conservation Within Their Homotypic Pairs Distinguishes DNA-Binding Domains of Target Transcription Factors in ChIP-Seq Data

    Levitsky, V. G., Raditsa, V. V., Tsukanov, A. V., Mukhin, A. M., Zhimulev, I. F. & Merkulova, T. I., 4 Jan 2025, In: International Journal of Molecular Sciences. 26, 1, 386.

    Research output: Contribution to journal › Article › peer-review

  22. Pharmacological targeting of caspase-8/c-FLIPL heterodimer enhances complex II assembly and elimination of pancreatic cancer cells

    König, C., Ivanisenko, N. V., Ivanisenko, V. A., Kulms, D. & Lavrik, I. N., 3 Jan 2025, In: Communications Biology. 8, 1, 4.

    Research output: Contribution to journal › Article › peer-review

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