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  1. 2023

  2. Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Volianskaia, A. R., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Kolchanov, N. A., Lavrik, I. N. & Ivanisenko, V. A., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  3. Post-Quantum Cryptosystems: Open Problems and Solutions. Lattice-Based Cryptosystems

    Malygina, E. S., Kutsenko, A. V., Novoselov, S. A., Kolesnikov, N. S., Bakharev, A. O., Khilchuk, I. S., Shaporenko, A. S. & Tokareva, N. N., Sept 2023, In: Journal of Applied and Industrial Mathematics. 17, 4, p. 767-790 24 p.

    Research output: Contribution to journal › Article › peer-review

  4. Task-driven approach to artificial intelligence

    Vityaev, E. E., Goncharov, S. S. & Sviridenko, D. I., Sept 2023, In: Cognitive Systems Research. 81, p. 50-56 7 p.

    Research output: Contribution to journal › Article › peer-review

  5. Specifics of the Taxonomic Composition of Bacterial Microflora in the Respiratory Microbiome of Patients with Chronic Dust Bronchitis

    Paradnikova, S. A., Druzhinin, V. G., Baranova, E. D., Demenkov, P. S. & Larionov, A. V., Jun 2023, In: Molecular Genetics, Microbiology and Virology. 38, 2, p. 70-78 9 p.

    Research output: Contribution to journal › Article › peer-review

  6. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

  7. 3D Seismic Inversion for Fracture Model Reconstruction Based on Machine Learning

    Протасов, М. И., Кенжин, Р. М. & Павловский, Е., 2023, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer, p. 105-117 13 p. 8. (Lecture Notes in Computer Science (LNCS); vol. 14389).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  8. Composition of bacterial microbiome in sputum of patients with localized forms of pulmonary tuberculosis

    Druzhinin, V. G., Baranova, E. D., Demenkov, P. S., Zakharova, J. V., Lavryashina, M. B., Larionov, A. V., Matskova, L. V., Shabaldin, A. V. & Pyanzova, T. V., 2023, In: Pulmonologiya. 33, 5, p. 645-656 12 p.

    Research output: Contribution to journal › Article › peer-review

  9. Diagnosis Neuro-Oncology Diseases via Artificial Intelligence and Multi-Sequence MRI Methods

    Letyagin, A., Amelina, E., Tuchinov, B., Groza, V., Amelin, M., Golushko, S. & Pavlovskiy, E., 2023, 2023 IEEE Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2023 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 112-117 6 p. (2023 IEEE Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2023 - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  10. Mathematical problems and solutions of the Ninth International Olympiad in Cryptography NSUCRYPTO

    Idrisova, V. A., Tokareva, N. N., Gorodilova, A. A., Beterov, I. I., Bonich, T. A., Ishchukova, E. A., Kolomeec, N. A., Kutsenko, A. V., Malygina, E. S., Pankratova, I. A., Pudovkina, M. A. & Udovenko, A. N., 2023, In: Прикладная дискретная математика. 62, p. 29-54 26 p., 4.

    Research output: Contribution to journal › Article › peer-review

  11. On the number of ℓ-suitable Boolean functions in constructions of filter and combining models of stream ciphers

    Bonich, T. A., Panferov, M. A. & Tokareva, N. N., 2023, In: Прикладная дискретная математика. 62, p. 21-28 8 p.

    Research output: Contribution to journal › Article › peer-review

  12. Seismic Inversion for Fracture Model Reconstruction: From 1D Inversion to Machine Learning

    Protasov, M., Kenzhin, R., Dmitrachkov, D. & Pavlovskiy, E., 2023, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer, p. 99-109 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13957 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  13. Восстановление модели трещин на основе машинного обучения и трехмерного свёрточного моделирования

    Протасов, М. И., Кенжин, Р. М. & Павловский, Е., 2023, In: Геофизика. 3, p. 58-63 6 p.

    Research output: Contribution to journal › Article › peer-review

  14. 2022

  15. Binary Brain Tumor Classification With Semantic Features Using Convolutional Neural Network

    Лыу, М. Ш. К. & Pavlovskiy, E., 25 Oct 2022, Proceedings - 2022 Ural Symposium on Biomedical Engineering, Radioelectronics and Information Technology, USBEREIT 2022: 2022 USBEREIT. Institute of Electrical and Electronics Engineers Inc., p. 44-47 4 p. (Proceedings - 2022 Ural Symposium on Biomedical Engineering, Radioelectronics and Information Technology, USBEREIT 2022).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  16. Applying Variational Circuits in Deep Learning Architectures for Improving Discriminative Power of Speaker Embeddings

    Blankson, R. & Pavlovskiy, E., 2022, Proceedings of International Conference on Data Science and Applications, ICDSA 2021. Saraswat, M., Roy, S., Chowdhury, C. & Gandomi, A. H. (eds.). Springer Nature Singapore ed. Singapore: Springer, Vol. 287. p. 483-492 10 p. (Lecture Notes in Networks and Systems; vol. 287).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  17. A quadratic part of a bent function can be any

    Tokareva, N. N., 2022, In: Siberian Electronic Mathematical Reports. 19, 1, p. 342-347 6 p.

    Research output: Contribution to journal › Article › peer-review

  18. Brain Tumor Segmentation with Self-supervised Enhance Region Post-processing

    Pnev, S., Groza, V., Tuchinov, B., Amelina, E., Pavlovskiy, E., Tolstokulakov, N., Amelin, M., Golushko, S. & Letyagin, A., 2022, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Revised Selected Papers. Crimi, A. & Bakas, S. (eds.). Springer, p. 267-275 9 p. 24. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12963 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  19. Cascaded Training Pipeline for 3D Brain Tumor Segmentation

    Luu, M. S. K. & Pavlovskiy, E., 2022, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Revised Selected Papers. Crimi, A. & Bakas, S. (eds.). Springer, p. 410-420 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12962 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  20. Chronic dust bronchitis: composition of the sputum bacterial microbiome and its association with chromosome damage in blood lymphocytes

    Druzhinin, V. G., Baranova, E. D., Demenkov, P. S., Matskova, L. V., Paradnikova, S. A., Volobaev, V. P. & Larionov, A. V., 2022, In: Ecological Genetics. 20, 4, p. 325-337 13 p.

    Research output: Contribution to journal › Article › peer-review

  21. Improving Brain Tumor Multiclass Classification With Semantic Features

    Sao Khue, L. M. & Pavlovskiy, E., 2022, Proceedings - 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2022. Institute of Electrical and Electronics Engineers Inc., p. 150-154 5 p. (Proceedings - 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2022).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  22. Multi-Class Brain Tumor Segmentation via 3d and 2d Neural Networks

    Pnev, S., Groza, V., Tuchinov, B., Amelina, E., Pavlovskiy, E., Tolstokulakov, N., Amelin, M., Golushko, S. & Letyagin, A., 2022, ISBI 2022 - Proceedings: 2022 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2022-March).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  23. Validation of preoperative diagnosis of malignant thyroid tumors using a molecular classifier

    Titov, S. E., Lukyanov, S. A., Kozorezova, E. S., Demenkov, P. S., Sergiyko, S. V., Veryaskina, Y. A., Vorobyov, S. L., Sleptsov, I. V. & Gostimsky, A. V., 2022, In: Voprosy Onkologii. 68, 6, p. 741-751 11 p.

    Research output: Contribution to journal › Article › peer-review

  24. Особенности создания базы данных нейроонкологических 3D МРТ-изображений для обучения искусственного интеллекта

    Амелина, Е. В., Летягин, А. Ю., Тучинов, Б. Н., Толстокулаков, Н. Ю., Амелин, М. Е., Павловский, Е., Гроза, В. В. & Голушко, С. К., 2022, In: Сибирский научный медицинский журнал. 42, 6, p. 51-59 9 p., 6.

    Research output: Contribution to journal › Article › peer-review

  25. 2021

  26. Prioritization of biological processes based on the reconstruction and analysis of associative gene networks describing the response of plants to adverse environmental factors

    Demenkov, P. S., Oshchepkova, E. A., Ivanisenko, T. V. & Ivanisenko, V. A., Sept 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 5, p. 580-592 13 p., 13.

    Research output: Contribution to journal › Article › peer-review

  27. The Degree of Decidable Categoricity of a Model with Infinite Solutions for Complete Formulas

    Goncharov, S. S. & Marchuk, M. I., Jul 2021, In: Algebra and Logic. 60, 3, p. 200-206 7 p.

    Research output: Contribution to journal › Article › peer-review

  28. База данных симптомов заболеваний, представленных в научных публикациях PubMed, для подсистемы отложенных консультаций информационной системы Университетской клиники

    Гайслер, Е. В., Деменков, П. С., Иванисенко, В. А., Иванисенко, Т. В. & Сайк, О. В., 19 Feb 2021, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2021620298, Priority date 5 Feb 2021, Priority No. 2021620147

    Research output: Patent › Database registration

  29. Preoperative Typing of Thyroid and Parathyroid Tumors with a Combined Molecular Classifier

    Titov, S. E., Kozorezova, E. S., Demenkov, P. S., Veryaskina, Y. A., Kuznetsova, I. V., Vorobyev, S. L., Chernikov, R. A., Sleptsov, I. V., Timofeeva, N. I. & Ivanov, M. K., 11 Jan 2021, In: Cancers. 13, 2, p. 1-17 17 p., 237.

    Research output: Contribution to journal › Article › peer-review

  30. Detonation of an Explosive Containing Carbon Nanotubes

    Ershov, A. P., Dashapilov, G. R., Karpov, D. I., Kashkarov, A. O., Luk’yanov, Y. L., Pruuel, E. R. & Rubtsov, I. A., Jan 2021, In: Combustion, Explosion and Shock Waves. 57, 1, p. 104-111 8 p.

    Research output: Contribution to journal › Article › peer-review

  31. Development of a technology for collecting and analyzing data for monitoring based on an ontological approach

    Molorodov, Y. I. & Kasatkin, O. V., 2021, In: CEUR Workshop Proceedings. 3006, p. 212-221 10 p.

    Research output: Contribution to journal › Conference article › peer-review

  32. Maximums of the additive differential probability of exclusive-or

    Mouha, N., Kolomeec, N., Akhtiamov, D., Sutormin, I., Panferov, M., Titova, K., Bonich, T., Ishchukova, E., Tokareva, N. & Zhantulikov, B., 2021, In: IACR Transactions on Symmetric Cryptology. 2021, 2, p. 292-313 22 p.

    Research output: Contribution to journal › Article › peer-review

  33. The seventh International Olympiad in Cryptography: problems and solutions

    Gorodilova, A. A., Tokareva, N. N., Agievich, S. V., Carlet, C., Idrisova, V. A., Kalgin, K. V., Kolegov, D. N., Kutsenko, A. V., Mouha, N., Pudovkina, M. A. & Udovenko, A. N., 2021, In: Siberian Electronic Mathematical Reports. 18, 2, p. 4-29 26 p., 26.

    Research output: Contribution to journal › Article › peer-review

  34. Using mixed reality technologies to explore the exhibits of the Kuzbass Botanical Garden

    Molorodov, Y. I. & Chernyavtsev, E. D., 2021, In: CEUR Workshop Proceedings. 3006, p. 203-211 9 p.

    Research output: Contribution to journal › Conference article › peer-review

  35. Математическое моделирование функционирования сигнального пути p53 при повреждении ДНК.I. Модель активации системы p53 - Mdm2 - Wip

    Olga, V. F. & Ksenia, G. S., 2021, In: Journal of Computational Technologies. 26, 6, p. 33-53 21 p., 3.

    Research output: Contribution to journal › Article › peer-review

  36. 2020

  37. A black-box approach to the construction of metal-radical multispin systems and analysis of their magnetic properties

    Kadilenko, E. M., Gritsan, N. P., Tretyakov, E. V., Fokin, S. V., Romanenko, G. V., Bogomyakov, A. S., Gorbunov, D. E., Schollmeyer, D., Baumgarten, M. & Ovcharenko, V. I., 14 Dec 2020, In: Dalton Transactions. 49, 46, p. 16916-16927 12 p.

    Research output: Contribution to journal › Article › peer-review

  38. Ferromagnetically Coupled S=1 Chains in Crystals of Verdazyl-Nitronyl Nitroxide Diradicals

    Tretyakov, E. V., Zhivetyeva, S. I., Petunin, P. V., Gorbunov, D. E., Gritsan, N. P., Bagryanskaya, I. Y., Bogomyakov, A. S., Postnikov, P. S., Kazantsev, M. S., Trusova, M. E., Shundrina, I. K., Zaytseva, E. V., Parkhomenko, D. A., Bagryanskaya, E. G. & Ovcharenko, V. I., 9 Nov 2020, In: Angewandte Chemie - International Edition. 59, 46, p. 20704-20710 7 p.

    Research output: Contribution to journal › Article › peer-review

  39. Preoperative detection of malignancy in fine-needle aspiration cytology (FNAC) smears with indeterminate cytology (Bethesda III, IV) by a combined molecular classifier

    Titov, S., Demenkov, P. S., Lukyanov, S. A., Sergiyko, S. V., Katanyan, G. A., Veryaskina, Y. A. & Ivanov, M. K., 1 Nov 2020, In: Journal of Clinical Pathology. 73, 11, p. 722-727 6 p.

    Research output: Contribution to journal › Article › peer-review

  40. ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature

    Ivanisenko, T. V., Saik, O. V., Demenkov, P. S., Ivanisenko, N. V., Savostianov, A. N. & Ivanisenko, V. A., 14 Sept 2020, In: BMC Bioinformatics. 21, Suppl 11, p. 228 21 p., 228.

    Research output: Contribution to journal › Article › peer-review

  41. On metric complements and metric regularity in finite metric spaces

    Oblaukhov, A. K., Sept 2020, In: Прикладная дискретная математика. 49, p. 35-45 11 p.

    Research output: Contribution to journal › Article › peer-review

  42. On Decidable Categoricity and Almost Prime Models

    Goncharov, S. S., Harizanov, V. & Miller, R., 1 Jul 2020, In: Siberian Advances in Mathematics. 30, 3, p. 200-212 13 p.

    Research output: Contribution to journal › Article › peer-review

  43. The Fifth International Students' Olympiad in cryptography - NSUCRYPTO: Problems and their solutions

    Gorodilova, A., Agievich, S., Carlet, C., Hou, X., Idrisova, V., Kolomeec, N., Kutsenko, A., Mariot, L., Oblaukhov, A., Picek, S., Preneel, B., Rosie, R. & Tokareva, N., 3 May 2020, In: Cryptologia. 44, 3, p. 223-256 25 p.

    Research output: Contribution to journal › Article › peer-review

  44. On Σ-Definability Over Hereditarily Finite and List Superstructures

    Aleksandrova, S. A., 1 May 2020, In: Journal of Mathematical Sciences (United States). 246, 6, p. 701-708 8 p.

    Research output: Contribution to journal › Article › peer-review

  45. Operation of a silicon microstrip detector prototype for ultra-fast imaging at a synchrotron radiation beam

    Shekhtman, L., Aulchenko, V., Kudashkin, D., Kudryavtsev, V., Pruuel, E., Ten, K., Tolochko, B. & Zhulanov, V., 1 Apr 2020, In: Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 958, 4 p., 162655.

    Research output: Contribution to journal › Article › peer-review

  46. Decompositions of decidable abelian groups

    Bazhenov, N., Goncharov, S. & Melnikov, A., 1 Feb 2020, In: International Journal of Algebra and Computation. 30, 1, p. 49-90 42 p.

    Research output: Contribution to journal › Article › peer-review

  47. A note on the properties of associated boolean functions of quadratic APN functions

    Gorodilova, A. A., 1 Jan 2020, In: Прикладная дискретная математика. 47, p. 16-21 6 p.

    Research output: Contribution to journal › Article › peer-review

  48. Ferromagnetically Coupled S=1 Chains in Crystals of Verdazyl-Nitronyl Nitroxide Diradicals

    Tretyakov, E. V., Zhivetyeva, S. I., Kazantsev, M. S., Shundrina, I. K., Zaytseva, E. V., Parkhomenko, D. A., Bagryanskaya, E. G., Gorbunov, D. E., Bagryanskaya, I. Y., Petunin, P. V., Postnikov, P. S., Trusova, M. E., Gritsan, N. P., Bogomyakov, A. S., Ovcharenko, V. I. & Postnikov, P. S., 2020, In: Advanced Materials. 132, 46, p. 20885-20891 7 p.

    Research output: Contribution to journal › Article › peer-review

  49. The expressiveness of looping terms in the semantic programming

    Goncharov, S., Ospichev, S., Ponomaryov, D. & Sviridenko, D., 2020, In: Сибирские электронные математические известия. 17, p. 380-394 15 p., 024.

    Research output: Contribution to journal › Article › peer-review

  50. 2019

  51. Combined quantitation of HMGA2 mRNA, microRNAs, and mitochondrial-DNA content enables the identification and typing of thyroid tumors in fine-needle aspiration smears

    Titov, S. E., Ivanov, M. K., Demenkov, P. S., Katanyan, G. A., Kozorezova, E. S., Malek, A. V., Veryaskina, Y. A. & Zhimulev, I. F., 28 Oct 2019, In: BMC Cancer. 19, 1, 1010.

    Research output: Contribution to journal › Article › peer-review

  52. Theoretical Treatment of Pulsed DNP Experiments: Effects of Spectral Exchange

    Nasibulov, E. A., Ivanov, K. L. & Sagdeev, R. Z., 1 Oct 2019, In: Applied Magnetic Resonance. 50, 10, p. 1233-1240 8 p.

    Research output: Contribution to journal › Article › peer-review

  53. Semantic Modeling and Hybrid Models

    Goncharov, S. & Sviridenko, D., Oct 2019, SIBIRCON 2019 - International Multi-Conference on Engineering, Computer and Information Sciences, Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 987-990 4 p. 8958196. (SIBIRCON 2019 - International Multi-Conference on Engineering, Computer and Information Sciences, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  54. On the differential equivalence of APN functions

    Gorodilova, A., 15 Jul 2019, In: Cryptography and Communications. 11, 4, p. 793-813 21 p.

    Research output: Contribution to journal › Article › peer-review

  55. Turing Degrees of Complete Formulas of Almost Prime Models

    Goncharov, S. S., Miller, R. & Harizanov, V., 1 Jul 2019, In: Algebra and Logic. 58, 3, p. 282-287 6 p.

    Research output: Contribution to journal › Article › peer-review

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