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  1. 2025

  2. MiceDEGdb: a knowledge base on differentially expressed mouse genes as a model object in biomedical research

    Podkolodnaya, O. A., Chadaeva, I. V., Filonov, S. V., Podkolodnyy, N. L., Rasskazov, D. A., Tverdokhleb, N. N., Zolotareva, K. A., Bogomolov, A. G., Kondratyuk, E. Y., Oshchepkov, D. Y. & Ponomarenko, M. P., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 1, p. 153-161 9 p.

    Research output: Contribution to journal › Article › peer-review

  3. The Task-Based Approach: A New Paradigm for Building Trustworthy Artificial Intelligence

    Nechesov, A. V., Vityaev, E. E., Goncharov, S. S. & Sviridenko, D. I., 2025, In: Bulletin of Irkutsk State University, Series Mathematics. 54, p. 96-112 17 p., 7.

    Research output: Contribution to journal › Article › peer-review

  4. Иерархическая классификация научных статей при помощи глубокого обучения (на примере иерархии УДК)

    Mamedov, V. Y., Kovalevsky, D. A., Morozov, D., Stolyarov, S. S. & Ospichev, S. S., 2025, In: Modeling and Analysis of Information Systems. 32, 1, p. 80-94 15 p., 6.

    Research output: Contribution to journal › Article › peer-review

  5. Реконструкция и анализ генной сети регуляции апоптоза при гепатоцеллюлярной карциноме на основе данных scRNA-seq и базы знаний ANDSystem

    Adamovskaya, A. V., Yatsyk, I. V., Kleshchev, M. A., Demenkov, P. S., Ivanisenko, T. V. & Ivanisenko, V. A., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 963-977 15 p., 5.

    Research output: Contribution to journal › Article › peer-review

  6. 2024

  7. Графический интерфейс для работы с фреймворком Каппа версии 0.0.2

    Кумар, Р., Павловский, Е. & Болотов, К. Ю., 10 Dec 2024, Редакционно-издательский центр НГУ, Patent No. 113, 10 Dec 2024, Priority date 10 Dec 2024

    Research output: Patent › Know-how registration

  8. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journal › Article › peer-review

  9. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journal › Article › peer-review

  10. Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

    Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

    Research output: Contribution to journal › Article › peer-review

  11. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  12. Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

    Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

    Research output: Contribution to journal › Article › peer-review

  13. Orthoweb: a software package for evolutionary analysis of gene networks

    Ivanov, R. A., Mukhin, A. M., Kazantsev, F. V., Mustafin, Z. S., Afonnikov, D. A., Matushkin, Y. G. & Lashin, S. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 874-881 8 p.

    Research output: Contribution to journal › Article › peer-review

  14. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journal › Article › peer-review

  15. Reconstruction and computer analysis of the structural and functional organization of the gene network regulating cholesterol biosynthesis in humans and the evolutionary characteristics of the genes involved in the network

    Mikhailova, A. D., Lashin, S. A., Ivanisenko, V. A., Demenkov, P. S. & Игнатьева, Е. В., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 864-873 10 p.

    Research output: Contribution to journal › Article › peer-review

  16. Программа для проведения филостратиграфического анализа генных сетей Homo sapiens, полученных с помощью ANDSystem (ЭНДФилострат) / A program for conducting phylostratigraphic analysis of Homo sapiens gene networks obtained using ANDSystem (ANDPhylostrat)

    Яцык, И. В., Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 27 Nov 2024, Patent No. 2024688299, 24 Oct 2024, Priority date 24 Oct 2024, Priority No. 2024685094

    Research output: Patent › Software registration

  17. An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

    Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

    Research output: Contribution to journal › Article › peer-review

  18. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journal › Article › peer-review

  19. A programmable ultrasound-based system for reconstructing the three-dimensional structure of the superficial femoral artery

    Tarasov, K. O., Epifanov, R. U. I., Gostev, A. A., Lysikov, D. A., Karpenko, A. A. & Mullyadzhanov, R. I., Sept 2024, In: Biomedical Engineering. 58, 3, p. 158-162 5 p.

    Research output: Contribution to journal › Article › peer-review

  20. Computable Boolean Algebras and Complexity of the Fréchet Ideal

    Goncharov, S. S., Sept 2024, In: Journal of Mathematical Sciences (United States). 284, 1, p. 72-82 11 p.

    Research output: Contribution to journal › Article › peer-review

  21. Чат бот и облачный сервис составления личных расписаний участников крупных мультиязычных мероприятий на основе интеллектуального анализа их предпочтений и компетенций

    Павловский, Е. & Тучинов, Б. Н., 27 Aug 2024, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2024680238, 20 Aug 2024, Priority date 20 Aug 2024, Priority No. 2024669513

    Research output: Patent › Software registration

  22. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Институт цитологии и генетики СО РАН, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

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