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  1. 2025

  2. Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

    Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

    Research output: Contribution to journal › Article › peer-review

  3. Программный комплекс для использования процедурной генерации в компьютерной игре вида «платформер»

    Алешков, Д. О., Анищенко, А. И., Бобровский, Я. А., Гринин, А. А., Дитенбир, А. А., Марченко, А. Е., Тютюнникова, М. Е., Ускова, Т. В. & Шигин, Ф. В., 20 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025611394, 23 Dec 2024, Priority date 23 Dec 2024, Priority No. 2024693171

    Research output: Patent › Software registration

  4. Фреймворк «Каппа»: управление датасетами, версия 1.0.0

    Кумар, Р., Павловский, Е., Денисов, С. С., Иванков, П. С. & Мищенко, А. С., 16 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025611211, 18 Dec 2024, Priority date 18 Dec 2024, Priority No. 2024692636

    Research output: Patent › Software registration

  5. On additive differential probabilities of the composition of bitwise exclusive-or and a bit rotation

    Kolomeec, N., Sutormin, I., Bykov, D., Panferov, M. & Bonich, T., 15 Jan 2025, In: Cryptography and Communications. 17, 2, p. 541-570 30 p.

    Research output: Contribution to journal › Article › peer-review

  6. Датасет по наблюдениям за флорой и фауной в городской среде

    Гичгелдиева, М. О., Кумар, Р. & Павловский, Е., 10 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025620139, 17 Dec 2024, Priority date 17 Dec 2024, Priority No. 2024626457

    Research output: Patent › Database registration

  7. Программный комплекс для восстановления трехмерной структуры поверхностной бедренной артерии человека на основе ультразвуковой диагностики

    Тарасов, К. О., Епифанов, Р. Ю., Гостев, А. А., Лысиков, Д. А., Карпенко, А. А. & Мулляджанов, Р. И., 9 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025610181, 16 Dec 2024, Priority date 16 Dec 2024, Priority No. 2024691869

    Research output: Patent › Software registration

  8. An Explanation Method for Semantic Segmentation Enhance Brain Tumor Classification

    Kenzhin, R., Luu, M. S. K., Pavlovskiy, E. & Tuchinov, B., 2025, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) . Springer, p. 319-330 12 p. 23. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) ; vol. 15406 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  9. MiceDEGdb: a knowledge base on differentially expressed mouse genes as a model object in biomedical research

    Podkolodnaya, O. A., Chadaeva, I. V., Filonov, S. V., Podkolodnyy, N. L., Rasskazov, D. A., Tverdokhleb, N. N., Zolotareva, K. A., Bogomolov, A. G., Kondratyuk, E. Y., Oshchepkov, D. Y. & Ponomarenko, M. P., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 1, p. 153-161 9 p.

    Research output: Contribution to journal › Article › peer-review

  10. 2024

  11. Графический интерфейс для работы с фреймворком Каппа версии 0.0.2

    Кумар, Р., Павловский, Е. & Болотов, К. Ю., 10 Dec 2024, Редакционно-издательский центр НГУ, Patent No. 113, 10 Dec 2024, Priority date 10 Dec 2024

    Research output: Patent › Know-how registration

  12. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journal › Article › peer-review

  13. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journal › Article › peer-review

  14. Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

    Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

    Research output: Contribution to journal › Article › peer-review

  15. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  16. Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

    Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

    Research output: Contribution to journal › Article › peer-review

  17. Orthoweb: a software package for evolutionary analysis of gene networks

    Ivanov, R. A., Mukhin, A. M., Kazantsev, F. V., Mustafin, Z. S., Afonnikov, D. A., Matushkin, Y. G. & Lashin, S. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 874-881 8 p.

    Research output: Contribution to journal › Article › peer-review

  18. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journal › Article › peer-review

  19. Reconstruction and computer analysis of the structural and functional organization of the gene network regulating cholesterol biosynthesis in humans and the evolutionary characteristics of the genes involved in the network

    Mikhailova, A. D., Lashin, S. A., Ivanisenko, V. A., Demenkov, P. S. & Игнатьева, Е. В., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 864-873 10 p.

    Research output: Contribution to journal › Article › peer-review

  20. Программа для проведения филостратиграфического анализа генных сетей Homo sapiens, полученных с помощью ANDSystem (ЭНДФилострат) / A program for conducting phylostratigraphic analysis of Homo sapiens gene networks obtained using ANDSystem (ANDPhylostrat)

    Яцык, И. В., Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 27 Nov 2024, Patent No. 2024688299, 24 Oct 2024, Priority date 24 Oct 2024, Priority No. 2024685094

    Research output: Patent › Software registration

  21. An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

    Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

    Research output: Contribution to journal › Article › peer-review

  22. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journal › Article › peer-review

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