1. 2025
  2. Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

    Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

    Research output: Contribution to journalArticlepeer-review

  3. Программный комплекс для использования процедурной генерации в компьютерной игре вида «платформер»

    Алешков, Д. О., Анищенко, А. И., Бобровский, Я. А., Гринин, А. А., Дитенбир, А. А., Марченко, А. Е., Тютюнникова, М. Е., Ускова, Т. В. & Шигин, Ф. В., 20 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025611394, 23 Dec 2024, Priority date 23 Dec 2024, Priority No. 2024693171

    Research output: PatentSoftware registration

  4. Фреймворк «Каппа»: управление датасетами, версия 1.0.0

    Кумар, Р., Павловский, Е., Денисов, С. С., Иванков, П. С. & Мищенко, А. С., 16 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025611211, 18 Dec 2024, Priority date 18 Dec 2024, Priority No. 2024692636

    Research output: PatentSoftware registration

  5. On additive differential probabilities of the composition of bitwise exclusive-or and a bit rotation

    Kolomeec, N., Sutormin, I., Bykov, D., Panferov, M. & Bonich, T., 15 Jan 2025, In: Cryptography and Communications.

    Research output: Contribution to journalArticlepeer-review

  6. Датасет по наблюдениям за флорой и фауной в городской среде

    Гичгелдиева, М. О., Кумар, Р. & Павловский, Е., 10 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025620139, 17 Dec 2024, Priority date 17 Dec 2024, Priority No. 2024626457

    Research output: PatentDatabase registration

  7. Программный комплекс для восстановления трехмерной структуры поверхностной бедренной артерии человека на основе ультразвуковой диагностики

    Тарасов, К. О., Епифанов, Р. Ю., Гостев, А. А., Лысиков, Д. А., Карпенко, А. А. & Мулляджанов, Р. И., 9 Jan 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2025610181, 16 Dec 2024, Priority date 16 Dec 2024, Priority No. 2024691869

    Research output: PatentSoftware registration

  8. An Explanation Method for Semantic Segmentation Enhance Brain Tumor Classification

    Kenzhin, R., Luu, M. S. K., Pavlovskiy, E. & Tuchinov, B., 2025, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) . Springer, p. 319-330 12 p. 23. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) ; vol. 15406 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  9. MiceDEGdb: a knowledge base on differentially expressed mouse genes as a model object in biomedical research

    Podkolodnaya, O. A., Chadaeva, I. V., Filonov, S. V., Podkolodnyy, N. L., Rasskazov, D. A., Tverdokhleb, N. N., Zolotareva, K. A., Bogomolov, A. G., Kondratyuk, E. Y., Oshchepkov, D. Y. & Ponomarenko, M. P., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 1, p. 153-161 9 p.

    Research output: Contribution to journalArticlepeer-review

  10. 2024
  11. Графический интерфейс для работы с фреймворком Каппа версии 0.0.2

    Кумар, Р., Павловский, Е. & Болотов, К. Ю., 10 Dec 2024, Редакционно-издательский центр НГУ, Patent No. 113, 10 Dec 2024, Priority date 10 Dec 2024

    Research output: PatentKnow-how registration

  12. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journalArticlepeer-review

  13. Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

    Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

    Research output: Contribution to journalArticlepeer-review

  14. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journalArticlepeer-review

  15. An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

    Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

    Research output: Contribution to journalArticlepeer-review

  16. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journalArticlepeer-review

  17. A programmable ultrasound-based system for reconstructing the three-dimensional structure of the superficial femoral artery

    Tarasov, K. O., Epifanov, R. U. I., Gostev, A. A., Lysikov, D. A., Karpenko, A. A. & Mullyadzhanov, R. I., Sept 2024, In: Biomedical Engineering. 58, 3, p. 158-162 5 p.

    Research output: Contribution to journalArticlepeer-review

  18. Чат бот и облачный сервис составления личных расписаний участников крупных мультиязычных мероприятий на основе интеллектуального анализа их предпочтений и компетенций

    Павловский, Е. & Тучинов, Б. Н., 27 Aug 2024, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2024680238, 20 Aug 2024, Priority date 20 Aug 2024, Priority No. 2024669513

    Research output: PatentSoftware registration

  19. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  20. Prediction of the Aggressive Clinical Course of Papillary Thyroid Carcinoma Based on Fine Needle Aspiration Biopsy Molecular Testing

    Lukyanov, S. A., Titov, S. E., Kozorezova, E. S., Demenkov, P. S., Veryaskina, Y. A., Korotovskii, D. V., Ilyina, T. E., Vorobyev, S. L., Zhivotov, V. A., Bondarev, N. S., Sleptsov, I. V. & Sergiyko, S. V., Jul 2024, In: International Journal of Molecular Sciences. 25, 13, 14 p., 7090.

    Research output: Contribution to journalArticlepeer-review

  21. A Principal Components Analysis and Functional Annotation of Differentially Expressed Genes in Brain Regions of Gray Rats Selected for Tame or Aggressive Behavior

    Chadaeva, I., Kozhemyakina, R., Shikhevich, S., Bogomolov, A., Kondratyuk, E., Ощепков, Д. Ю., Orlov, Y. L. & Markel, A. L., May 2024, In: International Journal of Molecular Sciences. 25, 9, 16 p., 4613.

    Research output: Contribution to journalArticlepeer-review

  22. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journalArticlepeer-review

  23. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journalArticlepeer-review

  24. Harnessing Ensemble Machine Learning Models for Timely Diagnosis of Breast Cancer Metastasis: A Case Study on CatBoost, XGBoost, and LGBM

    Luu, M. S. K., Banerjee, S., Pavlovskiy, E. N. & Tuchinov, B. N., 2024, International Conference of Young Specialists on Micro/Nanotechnologies and Electron Devices, EDM. IEEE Computer Society, p. 2320-2325 6 p. (International Conference of Young Specialists on Micro/Nanotechnologies and Electron Devices, EDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  25. Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

    Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

    Research output: Contribution to journalArticlepeer-review

  26. Orthoweb: a software package for evolutionary analysis of gene networks

    Ivanov, R. A., Mukhin, A. M., Kazantsev, F. V., Mustafin, Z. S., Afonnikov, D. A., Matushkin, Y. G. & Lashin, S. A., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 874-881 8 p.

    Research output: Contribution to journalArticlepeer-review

  27. Reconstruction and computer analysis of the structural and functional organization of the gene network regulating cholesterol biosynthesis in humans and the evolutionary characteristics of the genes involved in the network

    Mikhailova, A. D., Lashin, S. A., Ivanisenko, V. A., Demenkov, P. S. & Игнатьева, Е. В., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 864-873 10 p.

    Research output: Contribution to journalArticlepeer-review

  28. Сравнительная молекулярная оценка неизмененной слизистой оболочки сегментов толстой кишки как возможной основы аденом

    Korotkevich, A. G., Zhilina, N. M., Demenkov, P. S., Veryaskina, Y. A. & Titov, S. E., 2024, In: Экспериментальная и клиническая гастроэнтерология. 4 (224), p. 20-29 10 p., 3.

    Research output: Contribution to journalArticlepeer-review

  29. Технология искусственного интеллекта для предоперационного анализа МРТ-изображений в нейроонкологии

    Летягин, А. Ю., Голушко, С. К., Рзаев, Д. А. О., Амелина, Е. В., Павловский, Е., Тучинов, Б. Н., Гроза, В. В., Амелин, М. Е. & Толстокулаков, Н. Ю., 2024, Новосибирск: ФГУП "Издательство СО РАН". 88 p.

    Research output: Book/ReportBookResearchpeer-review

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